genome.fa.s5517.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005517.1 Hibiscus syriacus cultivar Beakdansim tig00012749_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144552

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1414--1446	15	2.2	15	94	0	57	30	0	15	54	1.41
2639--2668	15	1.9	16	93	6	53	30	13	30	26	1.94
4506--4588	37	2.2	37	100	0	166	48	22	7	21	1.75
4757--4810	25	2.3	22	84	9	63	5	11	3	79	1.02
15418--15561	69	2.1	69	94	0	252	20	22	17	40	1.91
24862--24923	23	2.7	23	97	0	115	46	0	9	43	1.36
30534--30573	14	2.9	14	88	0	62	17	5	27	50	1.67
31687--31740	23	2.3	23	78	9	56	27	0	5	66	1.13
33485--33550	23	2.9	23	80	8	89	21	16	21	40	1.91
33551--33583	17	1.9	17	93	0	57	45	12	6	36	1.66
38576--38613	8	4.3	9	84	15	53	78	0	18	2	0.86
39150--39203	26	2.1	26	100	0	108	38	14	27	18	1.90
43439--43476	16	2.4	16	90	0	58	26	23	31	18	1.97
43438--43500	16	4.0	16	75	17	51	28	23	30	17	1.97
44135--44238	38	2.7	38	72	5	102	21	14	21	43	1.87
52832--52863	8	3.9	8	92	8	55	87	0	0	12	0.54
52835--52863	9	3.3	9	95	4	51	89	0	0	10	0.48
52923--53245	160	2.0	162	98	1	632	45	7	17	29	1.76
54144--54419	39	7.3	38	75	12	241	42	6	3	47	1.49
54150--54420	148	1.9	148	85	5	381	41	7	4	47	1.49
56469--56510	19	2.2	20	86	4	59	26	11	19	42	1.85
57643--57782	45	3.1	46	81	6	133	32	21	7	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57703--58059	45	8.0	45	86	4	474	26	23	10	39	1.88
57703--58059	90	4.0	90	91	2	531	26	23	10	39	1.88
66057--66098	19	2.2	20	86	4	59	26	11	19	42	1.85
66786--66848	31	2.0	31	100	0	126	44	6	28	20	1.76
72138--72314	90	2.0	89	94	1	309	45	6	10	36	1.66
72910--72968	30	2.0	29	86	3	82	44	6	18	30	1.76
74389--74430	19	2.2	19	91	0	66	35	14	16	33	1.89
75418--75456	20	2.0	21	85	10	55	28	0	30	41	1.57
77097--77144	19	2.5	19	86	6	62	45	6	16	31	1.72
77111--77156	19	2.5	18	82	6	56	47	6	13	32	1.68
77217--77264	6	7.7	6	77	9	51	56	0	22	20	1.43
77216--77273	13	4.5	13	84	4	73	55	0	22	22	1.44
81617--81668	24	2.2	24	89	0	77	21	19	36	23	1.95
90928--90974	22	2.1	23	84	11	62	23	0	6	70	1.10
90934--90983	22	2.3	20	77	12	55	24	0	6	70	1.10
90936--90986	23	2.3	22	80	6	59	21	0	5	72	1.05
92121--92242	57	2.1	57	100	0	244	38	29	13	18	1.89
93176--93232	30	1.9	30	85	7	80	57	0	28	14	1.37
95274--95400	29	4.4	28	85	9	148	43	20	2	33	1.65
95274--95400	57	2.2	58	85	5	168	43	20	2	33	1.65
95395--95457	17	3.6	17	89	2	90	12	20	44	22	1.85
98887--98923	19	2.0	18	89	5	56	72	0	10	16	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99117--99643	199	2.6	202	79	6	534	35	19	11	33	1.88
100883--100937	28	2.0	28	82	7	67	63	3	1	30	1.22
100996--101057	3	20.3	3	87	9	74	62	0	0	37	0.95
101112--101145	2	17.0	2	100	0	68	50	0	0	50	1.00
102290--102333	21	2.1	21	100	0	88	61	0	0	38	0.96
103037--103240	110	1.9	110	88	0	309	22	18	23	36	1.95
104372--104412	8	5.7	7	86	13	57	0	17	2	80	0.82
104372--104412	15	2.8	15	86	13	59	0	17	2	80	0.82
111531--111568	17	2.1	19	90	9	62	71	5	7	15	1.28
114765--114804	16	2.6	15	88	7	62	82	2	0	15	0.77
115142--115188	17	2.8	17	83	6	60	61	0	0	38	0.96
117317--117374	24	2.4	24	91	0	89	10	8	25	55	1.62
118381--118455	10	7.7	10	69	21	52	9	10	21	58	1.59
118387--118451	16	4.1	16	93	0	112	7	10	23	58	1.57
118383--118433	26	2.0	26	84	7	68	9	9	19	60	1.55
122082--122134	22	2.4	22	90	0	88	45	16	15	22	1.85
124775--124849	38	2.0	37	84	5	98	49	4	0	46	1.20
125817--125890	38	1.9	38	88	0	112	33	21	9	35	1.86

Tables:   1

The End!