Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005518.1 Hibiscus syriacus cultivar Beakdansim tig00012750_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63133

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2989--3033
2
23.5
2
91
8
76
53
0
0
46
1.00
8209--8264
17
3.3
17
72
18
53
12
23
44
19
1.84
8209--8258
12
4.3
12
80
10
59
12
24
44
20
1.85
8266--8359
9
9.7
10
76
11
81
29
26
25
18
1.98
8260--8358
19
5.2
19
75
17
71
29
26
27
17
1.97
15518--15582
22
3.0
22
97
0
121
9
26
46
18
1.79
15551--15583
17
1.9
17
100
0
66
9
24
48
18
1.76
15581--15695
19
6.1
19
85
3
160
29
28
25
16
1.97
15585--15695
38
2.9
38
93
2
188
29
28
25
16
1.96
19749--19781
16
2.1
16
88
5
50
48
3
6
42
1.43
21360--21409
17
2.8
18
82
14
50
54
2
2
42
1.23
21330--21458
62
2.1
63
81
7
147
52
0
4
41
1.27
21952--21987
18
2.0
18
100
0
72
66
5
0
27
1.13
22240--22270
16
1.9
16
93
0
53
51
6
0
41
1.27
22955--23044
45
2.0
45
85
8
121
47
1
1
50
1.15
22980--23053
26
3.0
26
70
20
68
50
0
1
48
1.09
22980--23045
28
2.3
29
82
12
84
46
0
1
51
1.10
23159--23241
39
2.1
41
86
8
118
44
1
1
53
1.16
25379--25410
14
2.2
15
94
5
57
68
0
0
31
0.90
34843--34884
19
2.2
19
91
0
66
42
4
7
45
1.52
35184--35231
19
2.5
20
76
6
55
64
2
8
25
1.32
35309--35340
14
2.2
15
94
5
57
65
0
0
34
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35309--35341
15
2.2
15
94
0
57
66
0
0
33
0.92
38112--38137
11
2.4
11
100
0
52
61
15
7
15
1.55
39025--39050
11
2.4
11
100
0
52
61
15
7
15
1.55
39933--39958
11
2.4
11
100
0
52
61
15
7
15
1.55
37655--40395
913
3.0
912
99
0
5418
35
15
13
34
1.87
44724--44787
4
16.8
4
76
12
55
73
3
4
18
1.14
44731--44780
18
2.6
19
81
12
57
70
4
6
20
1.25
44790--44931
33
4.4
34
70
16
102
46
8
3
41
1.51
44937--45250
38
8.4
37
79
12
256
45
6
3
44
1.47
48149--48185
17
2.2
17
100
0
74
27
32
16
24
1.96
50244--50559
158
2.0
158
97
0
596
34
17
15
32
1.91
50822--50870
21
2.3
21
92
0
80
32
0
20
46
1.51
50891--50920
14
2.1
14
93
0
51
40
10
13
36
1.78
51122--51221
7
14.7
7
81
4
80
19
1
38
42
1.58
50903--51267
163
2.2
165
85
5
479
23
6
26
43
1.78
59871--59918
2
25.0
2
91
8
82
50
0
0
50
1.00
60528--60583
22
2.4
23
85
14
80
66
3
1
28
1.19
60589--60637
15
3.1
15
80
16
55
61
0
10
28
1.29
61470--61517
23
2.1
23
96
0
87
37
8
16
37
1.79
61744--61782
20
2.0
20
84
0
51
33
15
10
41
1.81
62069--62513
178
2.5
180
90
3
673
27
15
13
43
1.85
62388--62950
111
5.1
112
91
3
840
25
14
14
45
1.83

Tables:   1

The End!