Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000552.1 Hibiscus syriacus cultivar Beakdansim tig00001078_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67008

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
971--1013
22
1.9
23
90
4
70
74
2
0
23
0.93
1051--1241
34
5.4
35
80
11
189
46
8
1
43
1.44
1030--1241
73
3.0
73
83
8
242
44
8
1
45
1.44
1111--1297
34
5.5
33
76
16
120
45
10
1
42
1.47
2050--2083
15
2.2
16
89
5
52
82
2
2
11
0.89
5625--5658
17
2.0
17
94
0
59
23
20
14
41
1.89
6334--6386
23
2.3
23
86
0
70
39
0
3
56
1.17
8559--8669
55
2.0
55
98
0
213
29
14
23
32
1.94
10789--10869
29
2.8
28
83
9
90
43
2
12
41
1.55
11032--11099
34
2.0
34
88
5
102
35
7
11
45
1.69
11185--11222
19
2.0
19
85
10
51
60
2
7
28
1.38
14104--14204
47
2.1
47
100
0
202
35
17
13
32
1.90
14221--14265
16
2.8
16
93
0
81
46
17
8
26
1.78
14911--15011
47
2.1
47
98
0
193
33
12
17
35
1.88
15767--15900
44
3.0
44
90
1
205
41
11
22
23
1.87
18871--18967
31
3.1
31
98
0
185
22
9
27
40
1.85
24479--24988
157
3.3
156
82
5
593
50
4
16
28
1.64
37867--37963
19
5.1
19
86
10
135
16
26
29
26
1.97
37848--37965
29
4.1
29
81
10
127
16
27
27
27
1.97
37848--37965
38
3.1
37
83
11
139
16
27
27
27
1.97
37897--37976
38
2.1
38
83
4
99
16
32
30
21
1.95
37962--38004
22
2.0
22
100
0
86
18
48
23
9
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37994--38031
7
5.4
7
93
0
67
18
28
26
26
1.98
45155--45212
19
3.1
19
90
5
73
20
25
27
25
1.99
45156--45214
9
6.3
9
76
7
55
18
28
27
25
1.98
45211--45268
5
10.8
5
82
14
71
18
53
22
5
1.64
45211--45275
22
3.0
22
97
0
121
18
50
23
7
1.72
45265--45302
7
5.4
7
100
0
76
15
28
28
26
1.96
50290--50429
60
2.4
59
78
9
151
42
11
5
41
1.63
52246--52449
45
4.5
45
79
3
196
37
7
16
38
1.77
52241--52449
90
2.3
90
81
6
271
36
8
15
39
1.77
52600--53132
58
9.4
54
76
13
272
37
7
12
42
1.70
52796--53132
61
5.7
60
82
6
334
35
7
13
43
1.71
52756--53159
58
6.8
58
81
6
352
37
6
13
43
1.70
53137--53176
17
2.3
18
91
4
64
55
0
10
35
1.34
53425--53572
80
1.9
80
86
0
215
47
12
6
33
1.68
53782--53822
21
2.0
21
95
0
73
36
2
14
46
1.58
63032--63075
6
7.3
6
97
0
79
54
0
45
0
0.99

Tables:   1

The End!