Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005520.1 Hibiscus syriacus cultivar Beakdansim tig00012753_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60650

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
142--177
19
1.9
19
94
5
65
22
0
5
72
1.05
145--186
19
2.2
19
87
8
59
26
0
4
69
1.08
11428--11462
1
35.0
1
94
0
61
97
0
2
0
0.19
12398--12861
52
8.9
52
98
0
871
23
15
24
37
1.93
13680--14655
113
8.6
113
91
1
1305
38
13
18
29
1.90
13680--14655
450
2.2
451
88
2
1420
38
13
18
29
1.90
14946--15073
3
42.7
3
93
0
220
34
0
0
64
0.99
16430--16465
19
1.9
19
94
5
65
22
0
5
72
1.05
19290--19330
17
2.3
18
87
4
57
31
2
4
60
1.30
23462--23487
3
8.7
3
100
0
52
34
30
0
34
1.58
23486--23511
3
8.7
3
100
0
52
65
0
0
34
0.93
23994--24346
130
2.7
131
87
4
484
31
19
17
30
1.95
25072--25725
45
14.8
44
79
5
486
40
17
17
24
1.91
25074--25752
90
7.7
89
79
6
593
39
17
17
25
1.91
25120--25752
132
4.8
129
77
7
533
39
17
17
25
1.91
28295--28329
3
11.7
3
93
0
61
62
0
2
34
1.10
29227--29704
45
10.9
42
74
12
356
26
15
16
40
1.89
29224--29704
87
5.5
86
76
12
388
26
15
17
40
1.89
30157--30206
14
3.5
14
78
5
55
60
10
12
18
1.59
30123--30212
29
3.1
29
80
6
85
63
6
12
17
1.49
31342--31720
188
2.0
188
96
0
695
39
7
26
26
1.83
32349--32493
20
6.7
20
75
16
128
43
11
24
20
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32335--32976
26
27.1
26
75
16
580
44
13
21
20
1.85
32369--32950
46
12.3
46
87
5
667
44
12
21
21
1.85
32434--33022
72
8.2
72
79
11
390
44
12
21
21
1.85
32937--33041
46
2.3
46
79
0
120
41
11
23
22
1.86
32373--33036
118
5.6
118
78
12
464
44
12
21
21
1.85
44777--44893
44
2.7
44
83
1
164
33
20
17
29
1.95
44803--44876
23
3.3
23
69
7
71
32
20
17
29
1.95
45363--45401
13
2.9
13
88
3
51
38
10
7
43
1.67
47142--47174
12
2.6
13
85
9
50
42
9
6
42
1.61
49229--49770
46
12.2
46
85
4
638
43
12
21
21
1.85
49243--49764
20
23.6
20
71
18
299
43
11
22
21
1.85
49229--49302
26
3.1
25
68
22
68
47
13
18
20
1.82
49231--49667
66
6.6
65
74
17
325
43
12
22
21
1.85
49397--49486
26
3.7
26
74
17
102
43
15
21
20
1.88
49614--49745
26
5.5
26
70
20
108
44
12
21
21
1.84
51634--51682
3
16.3
3
76
23
50
69
0
0
30
0.89
51629--51683
11
5.1
12
82
14
59
69
0
0
30
0.89
51643--51683
16
2.7
15
89
10
66
68
0
0
31
0.90
51920--51949
15
2.0
15
93
0
51
50
6
10
33
1.62

Tables:   1

The End!