genome.fa.s5521.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005521.1 Hibiscus syriacus cultivar Beakdansim tig00012754_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72851

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7567--7612	18	2.7	18	76	10	51	69	2	13	15	1.28
7819--7859	2	21.0	2	92	5	66	51	0	2	46	1.14
10222--10404	65	2.8	65	84	4	215	38	8	21	31	1.83
10353--10577	36	6.4	36	74	14	175	41	12	18	28	1.86
10365--10451	37	2.4	36	88	1	120	41	16	19	22	1.90
10299--10555	138	1.9	138	84	0	352	40	11	19	28	1.86
10387--10653	101	2.6	101	81	4	288	40	12	16	29	1.86
12314--12374	12	5.1	12	81	13	72	1	16	1	80	0.88
12314--12366	13	4.1	13	85	7	72	1	15	1	81	0.87
12297--12373	24	3.2	24	75	14	77	3	16	1	77	0.98
12326--12363	7	5.6	7	81	6	51	2	18	0	78	0.86
15417--15477	22	2.6	23	71	26	56	75	6	4	13	1.16
15681--15705	13	1.9	13	100	0	50	80	0	8	12	0.92
15683--15756	31	2.4	31	81	4	78	75	1	2	20	1.00
15737--15811	38	2.0	37	85	10	100	64	4	5	26	1.33
15849--15921	2	37.5	2	88	10	107	52	0	2	45	1.15
15832--15925	12	8.6	10	79	17	66	52	3	2	42	1.29
15891--15969	20	3.8	20	79	14	72	65	0	5	29	1.13
15917--15991	14	5.4	14	73	9	64	69	0	2	28	1.02
15915--15993	18	4.3	19	77	11	67	68	0	2	29	1.03
15921--15985	20	3.2	20	73	16	62	72	0	3	24	0.99
15913--15993	35	2.3	34	73	12	83	67	0	2	29	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23156--23186	14	2.2	14	100	0	62	67	6	19	6	1.35
23916--23956	15	2.7	15	96	0	73	56	0	12	31	1.36
27462--27506	23	2.0	23	82	8	56	33	4	8	53	1.52
27564--27638	32	2.3	33	76	2	80	42	1	13	42	1.52
27253--27724	198	2.4	195	83	4	558	39	4	8	47	1.52
29262--29293	2	16.0	2	100	0	64	50	0	0	50	1.00
32369--32752	192	2.0	193	84	4	499	39	10	12	37	1.78
33517--33616	18	5.4	18	71	15	78	58	2	11	29	1.44
33561--33606	9	5.2	9	77	15	51	60	0	8	30	1.26
34425--34469	16	2.8	16	100	0	90	37	0	8	53	1.32
36006--36033	14	2.0	14	100	0	56	42	0	7	50	1.30
38700--38880	100	1.8	100	83	0	245	39	7	14	38	1.76
48630--48747	60	2.0	60	86	3	166	35	7	22	34	1.82
48700--49070	52	6.9	52	86	4	404	37	11	24	26	1.90
48700--49070	105	3.5	102	84	4	409	37	11	24	26	1.90
50609--50663	21	2.7	21	97	2	103	30	0	18	50	1.47
51247--51294	22	2.2	22	85	7	62	22	4	0	72	1.01
51336--51375	13	3.1	12	89	10	53	27	0	0	72	0.85
55115--55187	20	3.3	20	67	29	58	27	15	21	35	1.93
58241--58400	74	2.2	74	88	2	241	30	2	11	55	1.48
58360--58419	19	3.2	19	73	15	54	31	0	13	55	1.39
59003--59043	21	1.9	22	90	5	66	19	4	0	75	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64760--65189	52	8.0	56	80	11	383	36	12	24	26	1.91
64828--65193	52	7.0	52	82	9	422	36	12	25	25	1.91
64828--65193	103	3.5	103	84	7	438	36	12	25	25	1.91

Tables:   1

The End!