Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005523.1 Hibiscus syriacus cultivar Beakdansim tig00012758_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54423

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
766--826
29
2.1
29
100
0
122
31
16
14
37
1.89
2542--2577
3
11.7
3
94
5
63
30
0
0
69
0.89
3603--3636
2
17.0
2
100
0
68
50
0
0
50
1.00
5272--5306
3
11.0
3
88
11
52
65
0
0
34
0.93
5279--5313
17
2.1
17
88
0
52
71
0
0
28
0.86
5451--5808
140
2.6
136
84
4
441
27
19
14
38
1.91
5727--6051
123
2.6
123
94
0
553
24
20
15
39
1.91
6953--6987
15
2.3
15
95
0
61
8
2
0
88
0.61
6951--6990
13
2.9
14
85
7
55
10
5
0
85
0.75
10513--10545
13
2.5
13
100
0
66
63
0
6
30
1.18
14273--14304
16
2.1
16
88
11
50
31
6
12
50
1.65
14333--14364
15
2.1
15
94
0
55
53
6
15
25
1.65
17144--17177
16
2.1
17
88
5
52
38
11
2
47
1.55
18362--18401
18
2.0
21
86
13
59
67
0
2
30
1.04
18554--18601
20
2.3
21
78
10
53
54
4
6
35
1.45
20020--20059
21
1.9
21
85
10
55
52
0
2
45
1.14
20182--20302
15
7.9
15
65
24
56
46
15
0
37
1.52
20169--20237
30
2.3
30
85
11
97
42
20
1
36
1.61
20255--20365
30
3.7
30
73
19
81
44
15
1
38
1.57
26097--26156
28
2.2
27
80
14
70
48
6
1
43
1.39
27443--27535
30
3.1
30
90
0
132
38
1
20
39
1.60
29486--29543
20
2.6
22
86
10
75
31
18
22
27
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31069--31113
21
2.2
20
88
4
63
20
13
33
33
1.91
31099--31151
18
2.9
18
85
0
70
20
16
32
30
1.95
34550--34601
19
2.7
19
100
0
104
30
17
30
21
1.96
34674--34711
20
1.9
20
94
0
67
31
18
23
26
1.97
36246--36305
21
3.0
21
83
9
81
20
21
28
30
1.98
38334--38369
2
18.0
2
100
0
72
50
0
0
50
1.00
40218--40640
111
3.8
111
87
3
550
29
14
22
32
1.94
47691--47717
2
13.5
2
100
0
54
48
0
0
51
1.00
52857--52882
4
6.5
4
100
0
52
23
0
0
76
0.78
52878--52904
3
9.0
3
100
0
54
33
0
0
66
0.92

Tables:   1

The End!