genome.fa.s5524.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005524.1 Hibiscus syriacus cultivar Beakdansim tig00012759_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87097

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3035--3083	19	2.5	20	73	3	55	38	20	12	28	1.89
9128--9180	16	3.2	17	76	13	56	47	0	0	52	1.00
9154--9191	11	3.7	11	83	16	55	36	0	0	63	0.95
9129--9191	23	2.9	23	82	13	64	44	0	0	55	0.99
9135--9187	26	2.0	27	88	3	81	43	0	0	56	0.99
9481--9509	14	2.0	15	93	6	51	37	0	0	62	0.96
10712--10770	31	1.9	31	85	0	82	52	15	20	11	1.73
11666--11785	52	2.3	51	84	4	143	41	5	24	29	1.76
11686--11792	51	2.1	52	85	5	146	40	3	27	28	1.73
13953--13995	20	2.0	20	82	8	50	39	0	23	37	1.55
14283--14329	19	2.5	19	100	0	94	23	17	34	25	1.96
14318--14375	20	2.6	22	86	10	75	31	18	22	27	1.97
15053--15104	25	2.0	27	82	14	65	46	1	23	28	1.63
22148--22201	23	2.3	23	87	6	74	27	20	33	18	1.96
22131--22212	23	3.7	23	75	15	66	23	21	30	24	1.99
26073--26288	117	1.8	117	82	5	276	27	15	8	48	1.73
32949--33026	38	2.0	39	90	2	122	24	12	28	34	1.92
39277--39304	3	9.3	3	100	0	56	64	0	35	0	0.94
39221--39380	76	2.1	76	98	0	311	38	15	25	21	1.92
39353--39408	3	18.7	3	100	0	112	66	0	33	0	0.92
39353--39612	129	2.0	129	98	0	502	50	9	28	12	1.70
39482--39534	3	17.7	3	100	0	106	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40232--40260	4	7.2	4	100	0	58	75	0	0	24	0.80
40971--41063	21	4.5	21	78	4	100	39	18	24	17	1.91
41052--41146	20	4.7	20	77	2	82	34	23	17	24	1.96
40971--41063	41	2.3	41	100	0	186	39	18	24	17	1.91
41049--41126	41	1.9	41	83	0	102	39	20	16	23	1.92
41331--41374	22	2.0	22	90	0	70	20	43	15	20	1.88
41638--41675	20	1.9	20	88	0	58	13	15	21	50	1.78
42993--43037	18	2.5	18	88	0	72	26	44	15	13	1.83
43519--43585	20	3.4	20	81	2	73	38	23	22	14	1.92
43574--43631	14	3.9	14	79	16	71	48	24	17	10	1.78
43558--43648	32	2.8	33	94	3	166	47	21	18	12	1.81
43665--43722	14	3.9	14	75	16	62	10	17	24	48	1.78
43660--43738	32	2.4	33	93	2	133	11	18	22	46	1.81
43711--43776	19	3.4	19	83	4	87	15	24	24	36	1.93
43723--43776	20	2.8	19	88	5	81	16	25	24	33	1.96
43808--43876	25	2.7	26	73	8	70	21	11	14	52	1.73
45645--45680	14	2.6	14	90	0	54	30	0	22	47	1.52
45787--45863	14	4.7	15	74	22	59	45	19	22	12	1.84
45797--45863	18	3.8	19	81	18	92	46	17	22	13	1.83
45882--45939	20	2.9	20	89	0	89	17	20	22	39	1.92
46996--47054	24	2.5	24	82	0	73	28	16	18	35	1.93
49546--49671	33	3.8	33	87	4	191	42	19	22	15	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49547--49671	66	1.9	66	96	0	232	42	19	22	16	1.89
49683--49747	19	3.7	19	70	19	68	12	24	20	43	1.86
49854--49890	14	2.6	14	91	0	65	45	24	0	29	1.53
51267--51347	21	3.9	21	66	6	65	23	20	33	22	1.97
51252--51374	42	2.9	41	80	7	113	23	16	36	23	1.94
53400--53497	33	2.9	33	89	1	142	39	25	23	11	1.88
53375--53556	19	9.9	19	76	14	168	43	21	21	12	1.86
53470--53557	39	2.3	38	94	2	149	46	20	19	13	1.83
54118--54170	20	2.7	20	93	0	88	26	20	28	24	1.99
54179--54232	20	2.7	20	97	0	99	25	18	24	31	1.97
54119--54235	61	1.9	61	85	0	162	23	17	24	33	1.97
54119--54253	61	2.2	61	81	2	155	22	20	24	32	1.98
54345--54413	28	2.5	28	97	0	129	27	14	31	26	1.95
54760--54847	43	2.1	44	85	8	121	31	11	7	48	1.68
56290--56438	81	1.8	81	82	2	192	36	14	6	41	1.73
56808--57004	20	9.6	20	73	10	112	26	23	21	28	1.99
56765--56881	40	2.8	42	78	8	116	24	27	18	29	1.98
56905--57004	41	2.5	40	88	1	137	27	24	22	27	1.99
57180--57222	22	2.0	22	95	0	77	23	41	16	18	1.89
57612--57703	20	4.7	20	82	4	107	15	17	21	45	1.85
57622--57673	19	2.7	19	87	3	68	15	21	25	38	1.92
59604--59669	20	3.3	20	89	0	96	34	27	19	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60107--60148	21	2.2	20	87	12	61	21	33	19	26	1.97
61605--61666	14	4.3	14	73	6	52	40	0	12	46	1.42
61765--61817	20	2.7	20	81	0	61	47	26	15	11	1.79
61861--62011	20	7.8	20	70	16	86	28	19	19	32	1.96
61833--62011	94	1.9	94	86	2	252	27	19	18	33	1.96
62171--62205	18	1.9	18	94	0	61	17	2	25	54	1.57
63340--63379	20	2.0	20	100	0	80	20	35	15	30	1.93
64262--64298	14	2.5	15	91	4	58	5	18	21	54	1.64
64488--64541	24	2.2	24	93	0	90	40	20	16	22	1.91
65363--65449	20	4.3	20	89	0	111	27	20	25	26	1.99
65363--65493	40	3.3	40	79	8	124	26	19	22	31	1.98
65433--65489	20	2.8	20	97	0	105	26	21	15	36	1.93
65485--65535	21	2.4	22	80	6	68	37	15	25	21	1.93
72604--72647	23	1.9	23	90	0	70	40	27	18	13	1.88
73462--73517	22	2.7	22	78	8	64	25	33	16	25	1.95
78244--78294	20	2.8	19	75	24	56	27	23	19	29	1.98
78363--78413	16	2.8	18	72	27	54	27	17	17	37	1.93
79915--79950	17	2.1	18	89	5	56	47	5	30	16	1.70
80336--80376	19	2.2	19	90	0	64	46	2	12	39	1.54
81217--81261	22	2.0	22	95	0	81	26	15	13	44	1.83
81760--81810	16	2.9	17	78	21	52	27	27	19	25	1.99
81760--81821	20	3.3	20	75	25	71	25	27	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81860--81921	20	3.3	19	70	25	60	27	27	19	25	1.99
81974--82014	21	2.0	21	90	0	64	29	21	26	21	1.99
83872--83925	19	2.8	19	86	8	65	50	1	12	35	1.52
85251--85301	16	2.9	16	78	21	50	29	27	17	25	1.98
85251--85421	36	5.0	36	69	18	139	28	28	15	26	1.96
85251--85324	20	4.0	20	75	24	63	28	31	14	25	1.95
85351--85425	20	4.0	19	72	22	61	25	28	18	28	1.98
86366--86422	24	2.4	24	84	0	78	42	19	21	17	1.90

Tables:   1

The End!