genome.fa.s5525.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005525.1 Hibiscus syriacus cultivar Beakdansim tig00012764_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66609

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1992--2112	19	6.3	19	72	17	81	43	0	4	52	1.20
1968--2126	78	2.0	78	97	0	300	44	0	4	50	1.21
2541--2635	29	3.2	29	73	5	100	37	17	3	41	1.66
2535--2647	60	1.9	60	90	3	183	36	20	2	40	1.66
2554--2658	29	3.6	28	72	16	88	36	20	3	39	1.71
2734--2848	60	1.9	60	82	3	142	39	6	22	32	1.79
5841--5900	13	4.6	13	71	22	54	55	1	0	43	1.10
5762--5990	122	1.9	122	79	12	263	48	8	7	35	1.62
7254--7364	15	8.2	14	71	20	60	64	0	2	31	1.13
7274--7364	3	31.0	3	76	14	84	67	1	2	29	1.10
8776--9091	156	2.0	156	87	4	453	40	8	10	39	1.71
22939--23159	95	2.3	95	83	6	261	34	16	23	25	1.95
23484--23642	54	2.9	54	88	0	237	27	16	19	35	1.94
23694--23849	54	2.9	54	84	1	215	28	19	18	33	1.95
24404--24450	23	2.0	23	92	8	78	40	21	4	34	1.73
25416--25446	16	1.9	16	93	0	53	29	19	12	38	1.89
28611--28679	10	7.1	10	76	12	72	18	23	30	27	1.98
28611--28681	19	3.7	19	88	5	90	18	25	29	26	1.98
28675--28731	17	3.4	17	92	4	98	17	42	24	15	1.88
28721--28757	7	5.4	7	93	6	67	16	29	29	24	1.96
28721--28753	13	2.5	13	95	5	57	15	30	30	24	1.95
29627--29750	63	2.0	63	82	6	153	17	28	28	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29627--29703	31	2.5	31	78	2	82	15	27	29	27	1.96
35932--35991	10	6.1	10	79	11	70	18	21	30	30	1.97
35933--35993	19	3.2	19	88	2	77	16	24	29	29	1.96
35987--36044	17	3.4	17	97	0	107	17	43	24	15	1.87
36034--36070	7	5.4	7	93	6	67	16	29	29	24	1.96
36034--36066	13	2.5	13	95	5	57	15	30	30	24	1.95
36939--37072	63	2.1	63	81	9	157	16	28	28	26	1.97
38821--38847	14	1.9	14	100	0	54	55	0	14	29	1.40
38962--39013	19	2.7	19	96	0	95	32	17	28	21	1.96
39922--40009	18	4.9	18	88	0	122	17	25	35	22	1.95
44161--44225	18	3.6	18	93	0	103	16	21	30	30	1.96
44160--44247	18	4.9	18	85	2	97	19	20	31	28	1.97
44405--44438	7	4.9	7	92	0	59	32	0	26	41	1.56
44405--44444	21	2.0	20	95	5	71	35	0	25	40	1.56
45130--45162	14	2.3	15	94	5	59	36	6	12	45	1.66
46870--46946	22	3.5	22	85	1	93	42	24	6	25	1.78
46870--46961	22	4.3	21	83	2	85	43	26	5	25	1.76
48262--48471	65	3.3	63	81	10	228	30	24	18	26	1.98
48443--48491	19	2.6	19	84	9	57	24	28	20	26	1.99
54250--54296	21	2.2	22	84	3	60	27	23	23	25	2.00
54250--54329	23	3.6	23	72	14	78	27	23	23	25	2.00
54248--54347	44	2.3	41	73	15	94	28	25	24	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55879--55922	21	2.1	21	83	8	54	11	40	13	34	1.81
56313--56363	2	25.5	2	100	0	102	49	0	0	50	1.00
57052--57100	19	2.6	19	84	9	57	24	28	20	26	1.99
59260--59290	5	6.4	5	96	3	55	64	19	0	16	1.29
59294--59370	7	10.9	7	69	8	57	77	3	5	12	1.07
59294--59370	14	5.4	14	72	7	66	77	3	5	12	1.07
59492--59554	31	2.0	31	90	0	99	47	20	3	28	1.65
59409--59589	82	2.2	83	90	1	292	51	18	2	27	1.60
59660--59739	23	3.7	23	73	15	64	75	6	2	16	1.12
59692--59739	23	2.0	23	88	4	69	77	6	0	16	0.97
59718--59859	17	8.7	16	68	25	68	71	5	6	16	1.27
60583--60609	14	1.9	14	100	0	54	66	14	7	11	1.43
60649--60712	7	9.9	7	83	16	77	73	10	0	15	1.09
60648--60715	13	5.3	13	80	16	79	75	10	0	14	1.06
60649--60723	20	3.8	20	80	16	95	74	9	0	16	1.06
60646--60727	45	1.9	41	83	14	103	75	8	0	15	1.03
61078--61113	18	2.0	18	88	0	54	25	8	22	44	1.80
61730--61798	2	34.5	2	91	5	113	49	2	0	47	1.16
61877--61905	5	5.8	5	100	0	58	41	17	0	41	1.49
61856--61975	2	57.5	2	71	22	70	44	7	4	44	1.51
62013--62133	57	2.1	59	86	9	167	46	3	4	45	1.41
62083--62184	11	9.7	11	70	26	71	40	0	5	53	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62088--62184	42	2.3	42	87	5	135	41	0	6	52	1.26
62088--62196	13	7.8	13	69	20	53	40	0	7	52	1.29

Tables:   1

The End!