Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005526.1 Hibiscus syriacus cultivar Beakdansim tig00012770_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87226

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5567--5609
17
2.5
17
82
17
54
0
13
6
79
0.93
5565--5607
19
2.3
19
81
14
54
0
13
6
79
0.93
5816--5855
20
2.0
20
90
0
62
65
0
20
15
1.28
6016--6117
36
2.9
36
91
1
170
28
4
36
30
1.78
6456--6498
19
2.2
20
87
4
61
48
6
9
34
1.62
9807--9846
20
2.0
20
95
0
71
65
0
22
12
1.26
10007--10112
36
2.9
36
94
2
178
29
4
36
29
1.78
38340--38379
20
1.9
20
85
10
53
32
7
32
27
1.85
42590--42629
20
1.9
20
85
10
53
32
7
32
27
1.85
52711--52931
92
2.4
93
79
4
241
37
16
10
36
1.83
52940--53433
93
5.3
93
80
1
515
37
11
18
33
1.86
52960--53431
186
2.5
185
84
3
581
37
11
17
33
1.85
53433--53649
93
2.4
90
83
5
256
36
17
8
37
1.80
55269--55293
13
1.9
13
100
0
50
72
8
16
4
1.24
57668--57731
23
2.7
23
80
17
69
82
10
6
0
0.82
57692--57743
12
4.4
12
85
11
63
78
9
11
0
0.95
57692--57723
13
2.5
13
100
0
64
81
6
12
0
0.87
57687--57723
14
2.6
14
87
12
58
81
8
10
0
0.89
57692--57750
11
5.2
12
77
18
56
77
10
11
0
0.98
73142--73193
19
2.6
21
90
6
81
46
5
13
34
1.67
75160--75214
24
2.3
24
81
6
58
34
20
10
34
1.87
77304--77355
19
2.6
21
90
6
81
46
5
13
34
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80450--80521
37
1.9
37
88
0
108
37
15
12
34
1.85
80463--80542
37
2.2
37
86
4
108
31
20
13
35
1.91

Tables:   1

The End!