genome.fa.s5527.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005527.1 Hibiscus syriacus cultivar Beakdansim tig00012771_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90984

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1670--1727	26	2.3	25	87	3	80	29	31	22	17	1.96
21566--21613	16	2.6	19	78	21	66	75	0	0	25	0.81
21560--21613	16	3.4	16	80	17	60	75	0	0	24	0.80
24877--25246	55	6.7	55	91	0	580	27	22	15	34	1.94
24872--26145	54	23.9	55	79	12	483	24	25	17	32	1.96
25225--26146	156	5.8	160	86	4	970	23	26	17	31	1.97
25254--26141	366	2.4	366	90	2	1377	23	26	18	31	1.97
27432--27483	9	5.6	9	86	8	61	1	9	3	84	0.82
38448--38490	21	2.0	21	81	0	50	30	30	25	13	1.94
38470--38621	67	2.3	67	89	3	225	30	27	26	15	1.96
39232--39276	23	2.0	23	86	0	63	20	24	28	26	1.99
41504--41674	87	2.0	87	97	0	324	29	16	16	37	1.91
41761--41807	11	4.1	11	82	17	60	40	0	0	59	0.97
41761--41829	3	23.7	3	75	16	56	39	0	0	60	0.97
41761--41800	16	2.5	17	88	8	57	40	0	0	60	0.97
41764--41816	24	2.3	23	84	12	72	43	0	0	56	0.99
41761--41830	30	2.4	30	86	9	92	40	0	0	60	0.97
47326--47408	29	2.8	29	94	1	148	40	13	14	31	1.84
50722--50751	15	2.0	15	100	0	60	13	0	26	60	1.34
50751--50806	24	2.3	24	84	3	67	16	48	10	25	1.78
52028--52109	29	2.8	29	98	1	155	39	13	14	32	1.85
52887--52912	9	2.9	9	100	0	52	53	0	23	23	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57582--57749	29	5.8	29	75	9	130	53	0	5	39	1.30
57702--57769	27	2.5	28	74	9	70	52	0	7	39	1.29
57740--57785	18	2.5	18	85	3	56	43	0	10	45	1.39
59010--59051	17	2.5	17	96	0	75	16	19	9	54	1.69
61595--61825	46	5.0	46	90	2	313	22	21	8	47	1.77
61626--61805	26	7.6	25	69	21	120	21	21	9	47	1.78
61655--61826	20	7.7	20	70	21	92	19	23	9	46	1.80
61817--62038	34	5.9	34	71	21	158	27	23	11	36	1.89
61813--62045	78	3.0	79	90	1	387	27	24	11	36	1.89
62074--62110	2	18.5	2	100	0	74	51	48	0	0	1.00
63695--63826	26	5.5	26	70	20	126	19	21	10	47	1.79
63694--63846	46	3.3	46	93	0	252	19	22	10	47	1.80
63767--63847	20	3.8	20	76	17	81	18	28	11	41	1.84
63838--64055	34	5.8	34	72	21	166	28	26	10	35	1.89
63834--64090	79	3.3	79	93	0	442	28	26	10	35	1.89
66262--66307	16	3.0	16	84	9	60	45	6	0	47	1.28
67034--67093	18	3.2	18	73	13	57	76	0	6	16	0.99
67072--67096	13	1.9	13	100	0	50	88	0	4	8	0.64
67101--67174	33	2.2	34	82	4	96	58	1	16	24	1.46
68512--68634	40	3.0	40	76	15	119	41	7	4	47	1.50
68512--68627	38	2.9	39	76	14	112	40	6	4	48	1.50
68578--68617	16	2.4	16	87	4	62	42	5	5	47	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68597--68660	24	2.7	24	95	0	119	42	4	3	50	1.39
68561--68721	62	2.6	63	81	13	206	41	5	3	49	1.44
68559--68721	64	2.6	64	82	13	212	41	5	3	49	1.44
68623--68697	38	1.9	39	84	7	100	41	5	4	49	1.44
68664--68727	24	2.7	24	95	0	110	40	6	4	48	1.49
68714--68757	15	2.9	15	93	0	79	45	18	0	36	1.49
69715--69757	22	2.0	22	95	0	77	13	13	16	55	1.69
80893--80917	5	5.0	5	100	0	50	80	0	0	20	0.72
82240--82293	28	1.9	28	88	0	81	55	5	0	38	1.23
82261--82312	21	2.5	20	75	12	50	48	7	1	42	1.43
82309--82486	79	2.3	79	83	7	213	39	11	6	42	1.67
82472--82516	15	3.0	15	90	0	63	46	11	4	37	1.60
82336--82507	39	4.4	39	76	7	179	40	9	6	43	1.63
82479--82522	15	2.9	15	86	0	52	47	11	2	38	1.52
82967--83075	6	18.2	6	99	0	191	30	33	2	33	1.72
84902--84948	20	2.3	20	88	0	67	34	21	19	25	1.96
85115--85195	22	3.7	22	91	0	108	18	44	18	18	1.87
85122--85204	22	3.8	22	88	3	87	19	44	15	20	1.86
85628--85682	19	2.8	20	81	15	69	14	12	21	50	1.76
87604--87646	4	10.8	4	79	0	50	25	2	4	67	1.22
87792--87909	21	5.6	21	76	13	116	21	34	18	25	1.96
87792--87909	43	2.8	42	87	3	166	21	34	18	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89417--89455	20	2.0	20	89	0	60	30	23	17	28	1.97
89483--89987	137	3.7	137	94	1	872	44	19	8	27	1.80
90023--90058	18	2.0	18	94	0	63	16	2	25	55	1.55

Tables:   1

The End!