Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005529.1 Hibiscus syriacus cultivar Beakdansim tig00012775_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52397

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2779--2821
22
2.0
22
95
0
77
20
25
27
25
1.99
12753--12804
27
1.9
27
88
0
77
40
1
19
38
1.63
12828--12871
23
1.9
23
90
0
70
36
6
11
45
1.67
14293--14522
101
2.2
101
77
12
225
55
12
2
29
1.49
18505--18586
29
2.8
29
92
1
128
30
13
13
42
1.82
19864--19893
15
2.0
15
100
0
60
53
33
0
13
1.40
26069--26107
18
2.2
18
100
0
78
33
0
25
41
1.56
29830--29861
6
5.5
6
92
7
57
84
0
0
15
0.63
29806--29861
11
4.8
11
78
20
60
78
1
0
19
0.84
31030--31065
18
2.1
18
89
5
56
77
0
0
22
0.76
31081--31157
27
2.9
27
84
5
102
48
3
0
48
1.20
31081--31157
26
2.9
27
88
5
102
48
3
0
48
1.20
31119--31214
38
2.5
39
93
1
167
44
7
1
46
1.38
31182--31244
28
2.3
27
88
2
99
41
9
3
46
1.52
31119--31235
39
3.0
38
86
6
155
44
7
1
46
1.42
31143--31282
66
2.1
66
82
12
180
44
7
2
45
1.44
32754--32838
43
2.0
43
83
4
109
17
23
15
43
1.87
40609--40643
14
2.5
14
95
0
61
5
37
14
42
1.69
43616--43668
16
3.1
16
82
15
61
75
0
7
16
1.02
43666--43705
2
20.0
2
90
10
64
50
2
0
47
1.14
43658--43704
22
2.2
21
92
3
76
53
2
0
44
1.12
45312--45381
33
2.1
33
100
0
140
28
12
20
38
1.89

Tables:   1

The End!