genome.fa.s5531.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005531.1 Hibiscus syriacus cultivar Beakdansim tig00012789_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79096

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5232--5292	30	2.0	30	84	6	79	49	8	3	39	1.49
16210--17108	51	17.8	51	75	10	610	41	22	5	31	1.75
16189--16850	101	6.5	101	83	5	675	41	22	5	30	1.76
16227--17103	151	5.8	152	77	9	670	41	22	4	31	1.74
16315--17088	354	2.2	354	84	2	1000	41	22	4	31	1.74
16413--17103	202	3.4	202	80	8	647	42	22	4	30	1.73
19078--19118	16	2.6	16	88	3	57	39	9	19	31	1.84
19078--19132	16	3.4	17	80	12	53	36	10	23	29	1.89
20046--20090	20	2.2	20	84	7	56	51	4	2	42	1.34
25707--25754	25	1.9	25	91	0	78	25	22	10	41	1.85
26421--26488	28	2.4	28	82	0	91	27	17	20	33	1.95
26918--26967	17	3.0	16	85	5	64	42	2	0	56	1.11
26929--26967	8	4.8	8	90	6	60	41	2	0	56	1.13
26914--26971	8	7.2	8	82	5	55	46	1	0	51	1.11
28876--28917	21	2.0	21	95	0	75	19	21	28	30	1.97
28876--28933	21	3.0	19	85	12	66	18	18	31	31	1.96
35404--35439	2	18.0	2	100	0	72	50	0	0	50	1.00
35683--35742	21	3.0	21	90	9	99	18	23	30	28	1.98
44725--44872	78	1.9	78	84	2	199	29	7	18	44	1.77
45289--45324	19	1.9	20	88	11	58	25	2	5	66	1.27
47267--47318	21	2.5	21	81	3	61	38	19	25	17	1.93
47307--47414	20	5.3	20	82	6	110	32	25	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47369--47421	20	2.7	20	90	0	79	24	26	20	28	1.99
47982--48122	19	7.8	19	71	17	104	12	24	19	43	1.86
48010--48097	33	2.6	33	96	1	158	11	27	22	38	1.88
50267--50333	21	3.2	21	66	6	55	23	35	20	19	1.95
50215--50333	42	2.8	42	81	5	107	22	36	18	22	1.95
51686--51721	14	2.6	14	95	0	63	30	0	25	44	1.54
51828--51880	19	2.8	19	97	0	97	45	20	20	13	1.84
51885--52035	19	8.7	19	63	21	71	14	21	20	43	1.88
51889--52015	33	3.8	33	87	8	195	14	22	19	44	1.86
51882--52014	66	2.0	66	95	0	239	15	21	19	42	1.88
54310--54334	12	2.1	12	100	0	50	0	28	0	72	0.86
54509--54562	24	2.2	24	90	0	81	40	20	16	22	1.91
55304--55417	20	5.7	20	81	6	122	22	17	27	32	1.96
55284--55421	41	3.4	41	78	7	147	21	17	25	35	1.95
55346--55439	41	2.3	42	81	9	113	19	18	25	37	1.94
55407--55458	20	2.5	21	84	3	70	19	23	19	38	1.93
56126--56178	21	2.5	21	93	0	88	30	32	20	16	1.95
56174--56614	21	20.7	23	74	15	322	21	19	22	36	1.95
56208--56650	42	10.5	42	90	4	633	21	18	23	36	1.95
57370--57440	21	3.4	21	72	14	74	38	21	16	23	1.93
57363--57460	21	4.7	20	68	16	65	35	21	18	24	1.95
57363--57501	42	3.3	42	88	1	199	37	19	17	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58051--58099	25	1.9	26	87	4	73	44	10	2	42	1.49
58401--58439	19	2.1	19	85	9	53	38	0	2	58	1.12
58745--58778	5	6.8	5	100	0	68	82	0	0	17	0.67
63743--63839	44	2.2	44	94	0	167	30	3	14	51	1.57
64062--64109	7	6.9	7	86	9	71	56	2	0	41	1.11
67769--67856	21	4.2	21	97	0	167	34	26	10	29	1.89
76065--76153	30	2.9	30	78	11	99	39	8	20	31	1.83
76347--76419	31	2.4	31	90	0	110	31	17	17	32	1.94
77124--77171	18	2.6	19	83	9	73	25	16	20	37	1.93
77981--78022	12	3.7	12	75	12	52	19	19	23	38	1.93
78515--78572	21	2.8	20	84	2	80	32	24	18	24	1.97
78495--78572	41	1.9	41	86	0	111	32	26	17	23	1.97
78500--78570	20	3.5	20	78	3	79	30	26	19	22	1.98

Tables:   1

The End!