Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005533.1 Hibiscus syriacus cultivar Beakdansim tig00012800_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77590

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6952--7064
7
16.3
7
66
21
51
70
0
6
22
1.14
6951--7106
28
6.4
24
69
24
80
72
0
5
21
1.10
7027--7072
22
2.1
21
84
11
58
76
0
4
19
0.96
7035--7104
7
9.7
7
72
10
52
75
0
2
21
0.93
8432--8509
34
2.3
34
86
2
104
47
5
2
44
1.38
8426--8676
38
6.7
36
73
17
124
46
5
3
43
1.46
8541--8626
40
2.1
41
81
10
115
45
6
4
43
1.51
8498--8629
42
3.2
40
79
15
128
46
5
4
43
1.46
8460--8611
76
2.0
76
82
11
184
46
5
5
42
1.50
9266--9714
83
5.5
83
80
7
436
24
18
24
32
1.97
9533--9688
75
2.1
76
90
1
242
23
16
27
32
1.96
9328--9714
159
2.4
160
84
6
460
24
18
25
31
1.97
9724--10434
124
5.9
124
86
6
1030
25
18
25
31
1.97
10075--10292
108
2.0
109
91
0
357
24
18
24
32
1.97
9954--10416
232
2.0
230
91
2
759
25
18
24
31
1.98
11656--11912
96
2.7
95
83
4
275
31
19
17
31
1.95
14523--14572
7
6.6
7
78
17
55
70
0
6
24
1.10
14589--14632
18
2.5
18
85
10
56
79
0
0
20
0.73
14594--14645
15
3.6
14
84
10
61
78
0
1
19
0.84
14530--14642
60
1.9
60
81
7
140
71
0
7
21
1.09
15893--15922
5
6.0
5
100
0
60
60
0
0
40
0.97
15939--15979
3
14.3
3
80
10
50
63
2
0
34
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15940--15979
17
2.4
17
80
16
55
62
2
0
35
1.09
15991--16067
33
2.3
33
88
4
111
46
3
3
45
1.39
16057--16227
33
5.0
32
72
21
143
45
6
3
45
1.46
16040--16265
35
6.4
33
75
19
151
44
7
4
43
1.51
15983--16335
38
9.9
36
76
16
240
44
7
3
44
1.49
17900--18044
38
3.9
36
80
10
134
42
2
8
46
1.48
26987--27075
31
2.9
29
71
17
72
32
16
1
49
1.54
26958--27075
62
1.9
62
87
3
175
29
17
4
48
1.66
29534--29591
29
2.0
29
90
6
91
46
13
10
29
1.77
32946--33389
123
3.7
122
89
4
656
25
19
14
40
1.89
34522--34562
21
2.0
21
95
0
73
58
7
7
26
1.51
34952--34989
6
6.7
6
88
11
62
13
13
0
73
1.09
34927--34989
22
2.9
22
88
6
85
17
12
0
69
1.18
34958--34996
16
2.4
16
95
4
69
12
15
0
71
1.14
38521--38552
9
3.6
9
95
0
55
53
0
21
25
1.46
45397--45449
24
2.2
25
77
16
58
66
1
1
30
1.13
45418--45471
28
2.0
27
88
3
81
59
0
5
35
1.21
46378--46405
2
14.0
2
100
0
56
50
0
0
50
1.00
49064--49115
4
12.0
4
88
11
68
1
25
0
73
0.94
55502--55620
59
2.0
58
91
1
193
63
15
5
15
1.47
57147--57318
57
3.0
57
92
0
272
34
31
20
13
1.91
61765--61936
57
3.0
58
83
3
215
34
29
19
15
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61985--62033
24
2.0
24
84
0
62
48
16
8
26
1.73
66385--66553
57
3.0
57
89
0
248
34
28
20
15
1.93
66607--66667
24
2.6
25
71
10
65
57
14
6
21
1.60

Tables:   1

The End!