Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005534.1 Hibiscus syriacus cultivar Beakdansim tig00012802_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71878

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2728--2783
21
2.7
21
94
0
94
35
16
21
26
1.94
2996--3026
2
15.5
2
100
0
62
51
0
0
48
1.00
4073--4107
17
2.1
17
94
0
61
77
0
2
20
0.90
4064--4176
9
12.4
9
77
6
68
68
0
1
30
1.00
4093--4189
34
2.9
34
90
3
153
61
0
0
38
0.96
5599--5647
2
25.0
2
95
4
91
51
0
0
48
1.00
7221--7420
78
2.5
79
82
4
233
32
15
18
34
1.92
8078--8134
21
2.7
21
91
0
96
22
21
31
24
1.98
10283--10323
13
3.1
13
92
3
64
41
7
14
36
1.74
10791--10842
23
2.3
22
83
9
77
25
19
32
23
1.97
14625--14664
21
1.9
21
90
10
64
32
7
5
55
1.50
15611--15727
45
2.5
46
86
6
157
29
23
15
30
1.95
21512--21567
22
2.7
21
83
10
62
30
23
17
28
1.97
22285--22348
21
3.0
21
77
4
67
21
42
6
29
1.78
23149--23192
21
2.1
21
91
0
70
6
36
15
40
1.74
24199--24362
65
2.5
65
84
2
215
30
26
15
27
1.96
26878--27068
41
4.7
41
73
7
147
27
20
18
33
1.96
26898--27070
82
2.1
82
81
0
211
25
18
19
36
1.94
26981--27214
41
5.6
41
76
6
150
28
16
17
38
1.91
27091--27213
43
2.9
42
81
2
147
31
14
15
38
1.88
27089--27213
42
3.0
42
80
2
142
31
15
16
37
1.89
29092--29162
21
3.4
21
98
0
133
19
4
25
50
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36826--36874
20
2.5
20
86
6
64
30
30
14
24
1.94
38945--39003
30
2.0
29
83
3
73
37
6
22
33
1.80
39234--39301
23
3.0
23
86
0
100
17
25
26
30
1.97
39731--39762
2
16.0
2
100
0
64
50
0
0
50
1.00
46648--46737
42
2.1
42
97
0
171
14
18
42
24
1.88
46763--46846
29
2.9
29
85
3
107
26
28
28
16
1.97
47129--47166
9
4.2
9
83
10
51
31
0
2
65
1.06
47249--47301
28
1.9
27
88
3
79
32
1
16
49
1.57
47248--47312
27
2.3
29
82
10
82
36
1
15
46
1.55
47428--47482
18
3.4
18
65
31
52
38
0
9
52
1.33
47507--47550
21
2.2
20
95
4
79
27
0
13
59
1.35
47729--47832
30
3.4
30
82
12
115
39
1
10
48
1.49
47874--47920
16
3.0
16
81
9
53
34
0
8
57
1.29
49107--49152
22
2.1
21
84
4
56
43
2
2
52
1.25
50147--50194
14
3.6
14
75
16
57
47
14
0
37
1.44
50146--50194
25
2.0
25
91
0
80
46
14
0
38
1.44
50146--50204
25
2.6
22
84
10
66
49
11
0
38
1.40
50166--50215
21
2.3
22
80
10
59
52
6
0
42
1.26
50162--50290
58
2.2
60
90
4
208
47
10
0
41
1.38
50215--50241
10
2.7
10
100
0
54
40
18
0
40
1.51
50225--50388
49
3.3
49
98
0
310
46
11
0
42
1.40
50372--50408
10
3.7
10
92
0
65
40
16
0
43
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50323--50457
69
2.0
69
96
0
252
45
12
0
42
1.42
50244--50926
177
3.9
173
88
7
765
45
12
0
41
1.45
50544--50592
24
2.0
24
84
7
64
44
14
0
40
1.45
50634--50926
60
4.9
60
93
3
479
45
13
0
40
1.46
50661--50709
24
2.0
24
84
7
64
44
14
0
40
1.45
50162--50923
237
3.3
236
84
12
991
46
12
0
41
1.45
50817--50919
35
3.2
35
62
25
91
45
12
0
41
1.42
53996--54049
28
1.9
28
96
0
99
57
12
0
29
1.36
53992--54056
28
2.3
28
84
10
96
55
10
0
33
1.35
54026--54074
21
2.3
21
85
3
71
53
16
0
30
1.43
54713--54847
29
4.5
29
76
7
126
16
25
34
23
1.95
54877--54901
12
2.1
12
100
0
50
16
44
16
24
1.86
60902--60958
3
18.3
3
89
7
87
63
0
0
36
0.95
60904--60966
20
3.2
19
86
6
72
60
3
0
36
1.13
61078--61390
36
8.6
36
87
4
339
25
22
17
34
1.96
61482--61540
20
3.0
20
92
0
100
33
20
20
25
1.97

Tables:   1

The End!