genome.fa.s5535.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005535.1 Hibiscus syriacus cultivar Beakdansim tig00012803_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66570

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2794--2953	33	4.7	34	79	13	170	30	8	17	44	1.78
2793--2943	34	4.4	35	80	15	158	28	7	19	44	1.78
2963--3344	36	11.1	36	74	15	333	41	12	19	26	1.87
2963--3143	101	1.8	99	86	4	265	41	13	18	26	1.87
2966--3343	170	2.2	171	93	3	654	41	12	19	26	1.87
3128--3316	101	1.9	102	85	3	265	41	11	19	27	1.86
3255--3314	19	3.3	19	65	25	56	45	6	20	28	1.76
9100--9196	3	32.3	3	85	4	133	61	1	2	35	1.14
9307--9361	15	3.5	16	85	7	51	67	0	9	23	1.19
9324--9368	15	2.9	15	90	6	63	68	0	4	26	1.08
10578--10625	14	3.4	14	77	11	53	43	10	2	43	1.50
30196--30262	33	2.0	33	94	5	118	26	19	35	17	1.94
31893--31984	39	2.3	40	83	5	107	32	21	16	29	1.95
31954--32014	30	2.0	30	100	0	122	34	19	22	22	1.97
31954--32036	30	2.8	30	90	0	112	28	19	25	26	1.98
35405--35446	22	1.9	22	85	9	59	33	0	4	61	1.17
35569--35637	14	4.9	14	73	16	61	43	2	5	47	1.42
35626--35672	8	6.2	8	76	14	55	38	2	10	48	1.50
35566--35666	22	4.7	22	72	8	91	41	2	6	48	1.45
35634--35672	14	2.7	15	84	4	53	38	2	10	48	1.51
36422--36464	21	2.0	21	81	0	50	27	27	25	18	1.98
37113--37181	23	3.0	23	78	0	66	23	26	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39760--39809	24	2.2	21	79	10	55	44	8	24	24	1.80
43917--44003	23	3.8	23	92	0	138	19	28	25	26	1.99
44604--44670	14	4.8	14	83	7	91	41	4	4	49	1.43
44599--44670	28	2.6	29	84	6	103	43	5	4	47	1.46
47586--47630	22	2.0	23	86	4	65	15	22	26	35	1.94
47603--47696	33	2.8	33	93	1	161	14	21	27	36	1.93
52129--52190	30	2.1	29	81	3	70	37	11	1	50	1.48
52164--52205	20	2.2	20	95	4	77	38	14	0	47	1.44
52171--52214	19	2.2	20	84	4	54	38	18	0	43	1.50
52446--52483	17	2.2	17	90	9	60	44	0	2	52	1.14
52497--52559	26	2.4	26	81	0	72	42	3	9	44	1.52
52525--52807	35	7.7	36	80	11	258	46	5	8	40	1.56
52525--52775	72	3.5	71	75	16	214	46	5	8	39	1.58
53116--53176	27	2.3	27	100	0	122	22	36	31	9	1.87
54126--54162	18	2.0	19	94	5	67	16	8	0	75	1.02
54139--54170	11	2.9	11	100	0	64	15	9	0	75	1.05
55597--55789	98	2.0	99	91	1	316	32	16	19	32	1.93
57260--57589	85	3.9	85	82	3	353	35	19	17	26	1.94
57260--57576	170	1.9	169	82	3	395	35	19	17	27	1.95
59053--59100	23	2.1	23	85	11	64	75	0	0	25	0.81
59076--59112	18	2.1	18	89	0	56	75	2	0	21	0.92
59075--59110	14	2.5	14	90	4	54	77	2	0	19	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59138--59168	2	16.0	2	93	6	55	51	0	0	48	1.00
59161--59207	24	2.0	24	86	0	67	48	6	4	40	1.48
59169--59375	35	6.1	35	76	13	200	42	7	4	45	1.52
59266--59325	27	2.2	27	90	0	93	41	10	5	43	1.60
59293--59375	34	2.4	36	85	4	125	42	6	4	46	1.49
59341--59390	24	2.1	24	88	7	75	40	8	4	48	1.51
59242--59424	61	3.0	59	78	9	140	41	7	4	46	1.52
60055--60387	84	3.9	85	85	5	388	26	18	19	34	1.95
65833--65877	18	2.8	15	78	18	54	77	2	2	17	0.97
65825--65870	18	2.5	18	92	3	74	78	0	4	17	0.91

Tables:   1

The End!