genome.fa.s5536.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005536.1 Hibiscus syriacus cultivar Beakdansim tig00012804_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58714

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3294--3334	22	1.9	21	90	5	64	31	24	21	21	1.98
3347--3434	21	4.2	21	97	0	167	34	26	10	29	1.89
4853--5008	64	2.5	62	79	9	154	27	17	19	34	1.95
11657--11744	30	2.8	31	80	10	108	39	9	20	30	1.83
11741--11765	2	12.5	2	100	0	50	52	0	0	48	1.00
11945--12080	31	4.3	32	76	9	111	30	18	19	31	1.95
11945--12030	31	2.8	32	85	5	113	32	17	16	33	1.92
12728--12777	19	2.6	19	87	6	75	26	16	20	38	1.92
13615--13659	24	2.0	23	82	8	56	24	20	15	40	1.91
14157--14214	21	2.8	20	84	2	80	32	24	18	24	1.97
14137--14214	41	1.9	41	86	0	111	32	26	17	23	1.97
14142--14212	20	3.5	20	78	3	79	30	26	19	22	1.98
16718--16750	2	17.0	2	93	6	59	48	0	0	51	1.00
20721--20754	12	2.8	12	90	0	50	44	2	0	52	1.16
20766--21052	37	7.5	36	74	12	218	43	3	5	46	1.45
20766--21138	73	5.0	74	74	14	273	44	4	5	46	1.44
22433--22464	13	2.5	13	95	5	57	31	0	0	68	0.90
22433--22464	6	5.2	6	92	7	55	31	0	0	68	0.90
23608--23645	20	1.9	20	100	0	76	36	10	28	23	1.88
23806--23870	33	1.9	34	84	9	89	49	4	1	44	1.32
29759--29826	2	34.0	2	100	0	136	50	0	0	50	1.00
30389--30430	15	2.7	15	79	17	50	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31911--31959	21	2.3	22	82	10	66	8	10	53	28	1.63
31933--32322	39	10.2	38	71	6	232	13	9	46	29	1.75
31958--32307	78	4.5	78	87	2	472	13	9	46	30	1.75
31958--32304	153	2.2	156	87	1	484	13	9	46	29	1.75
32793--32829	16	2.1	18	85	14	51	32	0	0	67	0.91
33189--33284	41	2.3	41	89	0	147	19	26	38	15	1.92
36827--36893	34	2.0	33	85	8	91	61	13	2	22	1.46
39178--39211	17	2.0	17	94	0	59	61	5	0	32	1.20
43574--43608	18	1.9	18	94	0	61	31	0	2	65	1.07
46636--46690	17	3.2	17	73	16	60	52	0	0	47	1.00
48955--49340	188	2.0	191	94	3	681	39	14	12	33	1.84
49346--49398	28	2.0	27	88	7	81	50	20	7	20	1.72
49843--49893	24	2.3	21	80	12	57	49	0	3	47	1.20
49994--50052	28	2.0	30	90	6	95	50	1	0	47	1.11
57094--57146	23	2.3	24	81	12	58	30	1	0	67	1.01
58172--58220	21	2.2	22	86	13	66	38	0	0	61	0.96
58174--58207	16	2.1	17	88	5	52	35	0	0	64	0.94

Tables:   1

The End!