genome.fa.s5537.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005537.1 Hibiscus syriacus cultivar Beakdansim tig00012816_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  154793

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3825--3871	24	2.0	24	91	4	78	25	40	8	25	1.84
6402--6449	21	2.2	21	85	3	60	14	14	12	58	1.64
9555--9627	31	2.4	30	82	6	85	41	5	8	45	1.57
9734--9799	32	2.0	33	82	2	80	51	6	3	39	1.42
12290--12321	13	2.3	15	89	10	50	65	3	21	9	1.35
17816--17918	30	3.4	30	97	0	188	25	19	23	32	1.98
23059--23113	22	2.5	22	100	0	110	47	3	18	30	1.66
23508--23603	31	3.1	30	71	12	79	27	16	20	35	1.94
23559--23688	30	4.3	30	91	1	179	24	17	23	33	1.96
24569--24600	13	2.3	15	89	10	50	65	3	21	9	1.35
27443--27490	24	2.0	24	87	0	69	33	18	6	41	1.76
29003--29750	311	2.4	303	81	7	792	27	17	18	36	1.93
28249--29750	624	2.4	619	82	6	1522	28	16	18	36	1.92
38864--38940	31	2.6	29	75	19	77	28	9	5	57	1.51
40558--40599	22	2.0	22	95	4	77	14	23	23	38	1.92
50307--50990	228	3.0	228	82	0	733	20	25	25	28	1.99
54087--54247	64	2.5	65	86	7	204	33	18	21	26	1.96
54177--55828	824	2.0	823	99	0	3295	38	7	21	32	1.82
56368--56447	21	3.8	21	95	3	142	23	30	25	21	1.99
57453--57499	24	2.0	24	82	0	58	46	4	0	48	1.21
62315--62364	20	2.5	20	93	0	82	26	22	12	40	1.88
62407--62468	20	3.1	20	81	4	72	30	16	20	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62434--62483	20	2.5	20	83	0	55	32	20	22	26	1.98
63511--63604	31	2.9	31	82	4	107	39	15	18	26	1.91
67840--67918	2	39.5	2	100	0	158	49	0	0	50	1.00
68675--69031	194	1.9	191	81	5	441	37	10	10	40	1.75
78929--78979	2	25.5	2	100	0	102	49	0	0	50	1.00
80645--81715	105	10.3	104	94	1	1851	30	13	14	40	1.85
80645--81715	208	5.1	209	94	2	1841	30	13	14	40	1.85
82383--82459	31	2.5	31	80	0	91	36	12	24	25	1.92
96065--96114	21	2.4	21	80	12	59	24	20	24	32	1.98
104440--104489	25	2.0	24	88	3	73	12	22	8	58	1.59
104440--104499	25	2.5	23	84	10	68	10	23	8	58	1.57
106636--106702	28	2.4	28	87	5	91	37	26	14	20	1.92
108589--108749	43	3.9	43	75	9	145	31	21	19	27	1.97
111546--111590	21	2.1	21	100	0	90	40	8	37	13	1.76
115863--115963	53	1.9	53	95	0	184	21	26	20	30	1.98
116404--116484	42	2.0	42	85	7	112	27	22	20	29	1.99
116472--116496	13	1.9	13	100	0	50	24	20	24	32	1.98
116445--116669	93	2.4	93	96	0	414	28	20	20	31	1.97
116565--116589	13	1.9	13	100	0	50	24	20	24	32	1.98
116791--116897	42	2.6	41	80	2	133	28	22	23	25	1.99
116613--117014	214	1.9	214	94	0	705	31	18	15	34	1.92
126121--126210	44	2.0	45	95	2	164	60	7	14	17	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127542--127608	28	2.4	28	87	5	91	37	26	14	20	1.92
127767--127812	20	2.3	20	96	3	85	15	23	8	52	1.70
130783--131108	43	7.6	42	85	7	356	40	22	15	21	1.91
131006--131075	21	3.3	21	66	18	63	34	20	21	24	1.97
131031--131097	22	3.1	22	68	20	68	38	23	19	17	1.93
130783--131104	86	3.8	86	85	4	429	40	22	15	20	1.90
130783--131108	128	2.5	128	84	7	378	40	22	15	21	1.91
132068--132132	21	3.1	21	95	0	121	18	27	4	49	1.67
133782--133813	16	2.0	16	93	0	55	9	6	46	37	1.61
135854--135919	6	11.0	6	98	0	114	16	19	33	30	1.94
146074--146112	16	2.4	16	91	4	60	35	25	12	25	1.92
150449--150524	32	2.5	32	91	6	122	28	10	15	44	1.80

Tables:   1

The End!