genome.fa.s5538.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005538.1 Hibiscus syriacus cultivar Beakdansim tig00012817_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62936

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1051--1135	20	4.7	20	71	24	80	25	18	30	24	1.98
1050--1112	31	2.0	31	96	0	117	25	19	30	25	1.98
1311--1367	30	1.9	30	92	3	98	43	14	7	35	1.72
3526--3559	3	10.7	3	87	12	50	0	32	0	67	0.91
3526--3559	13	2.6	13	100	0	68	0	32	0	67	0.91
4012--4054	21	2.0	21	81	0	50	27	30	25	16	1.97
4082--4119	20	1.9	20	88	0	58	23	34	31	10	1.89
4589--4803	102	2.1	102	95	3	398	24	13	24	38	1.91
4828--4869	21	2.0	21	95	0	75	19	26	28	26	1.98
10976--11013	20	1.9	20	88	0	58	23	34	31	10	1.89
11489--11706	103	2.1	103	97	0	409	25	12	24	37	1.91
11723--11785	23	2.7	23	85	4	83	20	25	26	26	1.99
18237--18282	20	2.3	20	84	0	56	43	0	17	39	1.49
19794--19824	2	16.0	2	93	6	55	51	0	0	48	1.00
20074--20161	43	2.0	44	93	2	151	52	14	7	25	1.69
20658--20723	3	22.0	3	82	0	60	10	54	0	34	1.35
20635--20733	30	3.3	30	82	2	92	14	48	2	35	1.55
20632--20723	6	15.3	6	78	4	78	13	50	1	35	1.48
22666--22696	14	2.2	14	94	0	53	61	6	0	32	1.21
22928--22972	16	2.9	15	80	6	54	68	0	2	28	1.01
25027--25072	16	2.9	16	93	0	83	54	23	13	8	1.66
25276--25333	24	2.4	24	100	0	116	31	24	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25324--25364	12	3.5	12	96	3	75	24	26	24	24	2.00
31255--31313	10	6.0	10	75	16	52	67	5	5	22	1.30
31253--31317	29	2.2	30	83	10	80	66	4	4	24	1.30
31254--31309	20	2.8	20	74	15	62	66	5	5	23	1.34
33462--33515	20	2.5	22	82	17	78	37	24	11	27	1.89
35942--35989	20	2.4	20	100	0	96	39	14	18	27	1.90
41811--41853	23	1.9	23	90	4	70	53	0	0	46	1.00
41972--42070	39	2.6	38	84	6	121	53	1	8	37	1.37
46254--46506	47	5.4	47	89	1	375	22	22	9	45	1.81
46260--46432	20	7.7	20	69	23	85	21	23	9	44	1.82
46325--46574	27	10.3	27	69	22	196	21	21	11	46	1.82
46418--46574	74	2.1	74	91	0	251	21	21	10	46	1.81
46974--47044	22	3.5	20	75	9	72	29	23	12	33	1.92
48875--48923	16	3.1	16	73	26	50	44	0	18	36	1.50
52807--52861	28	2.0	28	92	0	92	38	3	0	58	1.16
55170--55207	20	1.9	20	100	0	76	52	2	26	18	1.58
61233--61267	17	2.1	17	89	10	54	74	0	2	22	0.95
61289--61333	9	4.9	9	86	5	54	75	6	2	15	1.11

Tables:   1

The End!