Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005539.1 Hibiscus syriacus cultivar Beakdansim tig00012819_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129082

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5273--5333
27
2.3
27
73
0
68
70
11
8
9
1.34
18040--18100
24
2.5
24
79
12
63
67
11
13
8
1.42
18056--18104
25
2.1
23
85
11
64
65
12
14
8
1.47
22792--22818
11
2.5
11
100
0
54
7
7
0
85
0.75
31159--31198
20
1.9
20
85
10
53
32
7
32
27
1.85
31663--31714
24
2.2
24
82
0
59
30
19
23
26
1.98
43296--43341
19
2.3
20
85
3
58
34
15
6
43
1.72
43684--43763
35
2.2
37
86
4
110
28
38
5
27
1.78
44899--44949
23
2.2
24
90
10
81
7
15
11
64
1.48
44907--44956
22
2.2
24
85
7
68
10
12
14
64
1.51
60917--60968
23
2.2
24
89
3
79
9
17
11
61
1.55
62160--62210
20
2.6
20
87
3
68
31
13
5
49
1.66
62572--62637
13
5.5
11
74
22
62
33
34
3
28
1.73
62550--62654
36
2.9
36
94
1
176
31
35
4
28
1.78
66597--66681
11
7.2
11
69
22
57
31
34
4
29
1.78
66594--66698
36
2.9
36
92
1
167
30
34
5
29
1.81
67525--67593
33
2.1
33
83
5
86
31
1
36
30
1.67
71437--71505
33
2.1
33
83
5
86
31
1
36
30
1.67
76245--76349
36
2.9
36
90
1
167
28
36
6
28
1.82
78401--78468
28
2.4
28
85
0
91
60
13
17
8
1.58
83897--83929
16
2.1
16
100
0
66
42
6
18
33
1.75
89300--89332
16
2.1
16
94
0
57
42
3
18
36
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90881--90985
36
2.9
36
92
1
176
28
38
4
28
1.77
91389--91437
24
2.0
26
84
8
66
75
8
16
0
1.03
95414--95523
36
3.1
36
93
1
186
30
37
3
28
1.74
95664--95712
20
2.3
21
93
6
66
12
26
0
61
1.31
95673--95712
20
2.0
20
100
0
80
10
25
0
65
1.24
98372--98428
25
2.3
25
81
3
62
63
8
12
15
1.52
111701--111802
36
2.9
36
88
8
158
29
4
36
29
1.78
112143--112185
20
2.2
20
91
4
70
48
4
11
34
1.60
115021--115054
16
2.1
16
100
0
68
70
0
17
11
1.16
115266--115311
21
2.2
22
85
11
62
0
13
6
80
0.89
115701--115786
13
7.2
12
72
22
58
29
3
37
30
1.74
115683--115787
36
2.9
36
95
1
185
28
4
36
30
1.78
116130--116180
19
2.6
20
90
3
77
47
5
13
33
1.67
119016--119049
16
2.1
16
100
0
68
70
0
17
11
1.16
119681--119775
36
2.7
36
93
1
156
29
7
36
26
1.83
120117--120167
19
2.6
20
87
3
68
45
5
15
33
1.71
121640--121743
48
2.2
48
100
0
208
23
22
23
31
1.98
121668--121743
24
3.2
24
70
7
82
22
22
22
32
1.98
123794--123873
35
2.2
37
88
4
119
32
36
3
27
1.75
124013--124051
15
2.5
16
87
4
53
17
25
0
56
1.41
124313--124359
14
3.1
15
75
12
51
72
6
19
2
1.17

Tables:   1

The End!