genome.fa.s554.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000554.1 Hibiscus syriacus cultivar Beakdansim tig00001080_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74632

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
663--702	21	2.0	21	90	5	64	30	35	2	32	1.71
1919--1970	20	2.6	20	90	0	86	42	23	7	26	1.81
2117--2165	23	2.2	22	89	7	73	34	4	16	44	1.66
7365--7417	27	2.0	27	100	0	106	7	7	35	49	1.60
12566--12667	48	2.1	49	87	3	143	41	22	9	26	1.85
13905--13960	27	2.0	29	82	6	71	46	10	0	42	1.38
14619--14665	19	2.4	19	79	10	51	23	0	4	72	1.02
15680--15821	2	71.0	2	100	0	284	50	0	0	50	1.00
16954--17014	24	2.5	24	75	0	59	39	11	34	14	1.82
16954--16997	18	2.4	18	80	0	52	43	11	34	11	1.77
17105--17157	26	2.0	26	96	0	97	43	11	9	35	1.73
17534--17558	2	12.5	2	100	0	50	52	0	0	48	1.00
24091--24151	32	1.9	32	96	0	113	52	18	4	24	1.65
24277--24459	37	5.3	36	64	18	111	45	14	14	25	1.83
24234--24508	68	4.0	68	90	1	444	47	13	13	26	1.79
24246--24354	31	3.3	31	67	18	85	50	11	11	25	1.73
26627--26915	46	6.3	46	92	0	481	20	22	13	43	1.86
26831--26940	25	4.6	25	83	12	158	20	23	13	42	1.87
27318--27441	54	2.3	52	82	9	153	25	20	15	37	1.92
28664--28712	23	2.1	23	85	7	64	14	14	10	61	1.57
33567--33614	2	25.0	2	83	8	64	45	0	0	54	0.99
33965--34118	74	2.1	74	85	0	200	35	18	11	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35712--35774	24	2.6	24	80	10	65	36	3	1	58	1.23
35714--35788	20	3.5	22	75	17	77	36	4	1	58	1.25
35805--35851	25	2.0	23	84	16	60	25	14	0	59	1.36
35855--35889	8	4.4	8	89	10	54	22	0	0	77	0.78
35856--35947	41	2.3	39	83	9	105	25	4	2	68	1.19
35934--35988	23	2.4	23	82	8	76	25	9	5	60	1.49
40323--40398	30	2.5	30	80	17	86	73	3	5	17	1.17
40381--40438	5	11.2	5	77	14	55	77	3	3	15	1.04
40352--40455	42	2.5	42	80	14	126	73	4	4	17	1.19
40354--40438	42	2.0	42	88	11	129	76	3	5	14	1.11
40475--40559	4	21.0	4	72	20	52	72	1	8	17	1.15
40469--40580	59	2.0	55	83	13	142	72	1	9	16	1.19
42048--42347	164	1.8	165	86	0	440	26	20	22	31	1.98
42050--42396	84	4.2	83	76	4	319	25	19	23	30	1.98
42515--42941	110	3.9	110	91	1	666	22	19	23	34	1.97
43366--43442	32	2.4	32	84	0	91	33	24	12	28	1.93
44522--44567	15	2.9	16	79	20	53	2	15	6	76	1.09
44552--44595	12	3.8	12	91	5	65	0	15	4	79	0.89
44545--44588	19	2.3	19	84	0	52	2	13	4	79	0.98
44563--44597	19	1.9	19	88	11	56	0	14	2	82	0.77
47348--47374	6	4.5	6	100	0	54	55	0	0	44	0.99
47477--47504	3	9.3	3	100	0	56	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47482--47574	32	2.8	31	78	14	98	73	2	5	19	1.13
47514--47565	27	2.0	26	88	7	79	80	0	5	13	0.88
47614--47645	14	2.1	16	88	11	50	71	3	12	12	1.25
63817--63882	18	3.7	18	93	0	105	12	16	45	25	1.82
74104--74183	41	2.0	41	92	4	137	57	5	6	31	1.45

Tables:   1

The End!