Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005540.1 Hibiscus syriacus cultivar Beakdansim tig00012820_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62247

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
427--457
15
2.1
15
93
0
53
22
0
3
74
0.96
488--527
12
3.1
13
82
10
55
40
0
0
60
0.97
1167--1221
28
2.0
28
88
0
83
30
5
0
63
1.17
11791--11843
8
7.0
8
82
8
67
86
0
13
0
0.56
11794--11844
15
3.7
14
87
12
63
86
0
13
0
0.58
12963--13315
83
4.3
83
95
2
629
26
13
24
35
1.93
14117--14517
114
3.5
114
90
3
576
37
12
20
30
1.89
14854--14919
3
22.3
3
95
3
107
37
0
0
62
0.96
16354--16378
12
2.1
12
100
0
50
32
0
0
68
0.90
19006--19045
12
3.4
11
86
13
53
82
0
15
2
0.77
19006--19042
13
3.0
13
84
11
51
83
0
13
2
0.74
29036--29244
49
4.3
49
81
4
260
33
14
23
28
1.94
29040--29231
98
2.0
97
88
4
287
34
15
22
27
1.94
29842--29905
24
2.7
24
95
2
112
29
12
32
25
1.92
35457--35613
64
2.5
63
78
7
163
33
17
23
25
1.96
35601--35658
20
2.6
22
89
10
84
31
20
22
25
1.98
37426--37486
19
3.3
19
84
6
81
31
14
37
16
1.89
50096--50165
25
2.8
25
97
0
131
51
2
7
38
1.44
50140--50230
43
2.0
46
83
6
116
46
3
9
40
1.54
50184--50266
30
2.6
33
86
7
109
42
7
8
42
1.63
50417--50460
5
8.6
5
85
5
61
22
2
0
75
0.92
51338--51381
14
3.2
13
84
9
52
75
0
18
6
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53120--53158
2
20.0
2
94
5
71
48
0
0
51
1.00
53151--53287
30
4.6
30
76
7
136
45
5
8
41
1.56
53201--53299
30
3.3
28
78
10
90
46
4
9
40
1.54
57514--57552
20
2.0
20
84
0
51
30
12
25
30
1.93

Tables:   1

The End!