Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005541.1 Hibiscus syriacus cultivar Beakdansim tig00012827_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86570

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2155--2203
19
2.6
19
87
6
64
55
6
2
36
1.37
2171--2221
25
2.2
22
86
10
66
60
1
1
35
1.19
2505--2646
43
3.4
43
67
16
134
27
19
28
23
1.99
2492--2668
83
2.1
83
97
0
336
27
19
29
23
1.98
2539--2690
40
3.7
40
70
14
130
28
19
27
23
1.98
3801--3838
10
3.6
11
86
10
53
0
15
0
84
0.63
10845--10917
30
2.4
30
93
0
119
30
4
19
46
1.68
16915--16968
28
2.0
25
86
10
72
61
3
1
33
1.25
17927--17982
23
2.4
23
84
0
76
28
23
23
25
1.99
21084--21127
20
2.3
19
81
14
54
65
2
6
25
1.28
21979--22040
14
4.3
15
86
10
67
1
12
4
80
0.94
21979--22071
29
3.2
28
82
10
91
2
13
6
77
1.06
21991--22046
14
3.9
14
95
2
94
0
12
7
80
0.90
21991--22057
8
8.6
8
71
17
52
0
13
7
79
0.94
22058--22092
17
2.1
17
88
0
52
8
14
14
62
1.53
25465--25519
6
8.8
6
76
20
51
74
0
3
21
0.97
27362--27396
3
11.7
3
100
0
70
68
0
0
31
0.90
27932--28005
34
2.2
34
82
4
87
17
9
16
56
1.65
28584--28620
13
2.8
13
87
0
56
10
5
18
64
1.43
28636--28665
14
2.1
14
93
0
51
10
13
16
60
1.59
37680--37740
31
2.0
31
83
0
77
40
3
8
47
1.49
38044--38613
41
13.9
42
76
7
433
32
16
14
36
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38044--38590
83
6.7
82
80
7
504
31
16
14
37
1.89
38044--38590
164
3.3
163
81
4
566
31
16
14
37
1.89
43583--43655
23
3.2
23
92
0
119
34
5
21
38
1.77
44078--44145
23
3.0
23
88
0
100
35
5
19
39
1.76
43161--45485
490
4.8
489
91
4
3748
40
7
10
40
1.69
44965--45009
22
2.0
22
86
0
63
40
11
11
37
1.76
45028--45100
23
3.2
23
96
0
128
34
8
20
36
1.83
49590--49639
25
2.0
25
88
7
75
14
24
22
40
1.90
52404--52443
10
4.0
10
84
12
55
57
17
12
12
1.65
52609--52644
14
2.6
14
90
0
54
63
5
8
22
1.43
52964--53001
18
2.2
17
95
4
67
26
26
0
47
1.52
53243--53283
21
1.9
22
85
5
57
26
12
19
41
1.87
53391--53442
20
2.6
20
96
0
95
30
19
21
28
1.97
55927--55965
20
2.0
20
85
10
53
23
10
30
35
1.88
56820--56864
21
2.1
21
87
0
63
31
28
24
15
1.96
58540--58620
22
3.6
22
93
1
135
18
25
29
25
1.98
61848--61890
18
2.4
18
84
0
59
41
11
11
34
1.78
65188--65570
192
2.0
190
96
3
716
39
14
16
30
1.88
67593--67655
23
2.7
23
87
0
81
20
23
14
41
1.89
67611--67657
23
2.0
23
95
0
85
25
25
10
38
1.88
73118--73225
46
2.4
46
78
13
116
34
19
16
29
1.94
73259--73307
19
2.6
19
84
9
57
24
28
20
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74628--74675
19
2.5
20
82
3
62
50
6
14
29
1.67
76046--76165
21
5.8
20
80
12
134
21
35
20
23
1.96
76046--76168
42
2.9
44
82
9
148
21
35
19
23
1.96
76088--76165
20
3.7
23
79
14
71
23
35
19
21
1.96
77477--77635
65
2.5
65
84
5
189
28
19
22
29
1.98
77476--77685
65
3.2
64
77
15
184
27
19
23
30
1.98
78729--78772
21
2.1
21
86
0
61
34
15
40
9
1.79
85675--85719
19
2.3
20
84
3
56
24
15
15
44
1.85
86067--86130
28
2.3
28
91
0
110
25
10
18
45
1.82

Tables:   1

The End!