genome.fa.s5542.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005542.1 Hibiscus syriacus cultivar Beakdansim tig00012830_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66672

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6315--6910	133	4.5	134	83	2	702	32	19	18	29	1.96
6372--6883	267	1.9	269	86	2	735	33	19	18	27	1.96
9064--9102	21	1.9	20	84	5	51	35	23	12	28	1.91
15492--15543	20	2.6	20	96	0	95	36	13	23	26	1.92
18800--19442	54	12.0	54	85	4	820	34	22	16	26	1.95
36220--36275	10	5.8	9	85	12	58	14	28	28	28	1.95
36220--36275	19	2.9	19	82	12	69	14	28	28	28	1.95
38577--38663	35	2.6	34	90	5	140	29	10	20	39	1.86
38616--39324	72	10.2	67	72	15	248	39	12	20	27	1.89
38716--39424	36	20.2	36	78	10	725	40	12	20	27	1.88
38751--39424	174	3.9	174	81	7	848	40	12	20	27	1.88
38946--39043	21	5.2	20	64	26	63	38	12	21	27	1.89
38719--39386	137	4.8	137	82	6	586	40	12	19	26	1.88
39083--39148	21	3.5	19	71	25	59	42	12	18	27	1.85
38652--39386	347	2.1	349	89	1	1127	39	12	20	27	1.89
38925--39424	210	2.4	209	89	0	757	39	12	20	28	1.88
39134--39386	138	1.8	137	91	0	416	39	11	20	27	1.88
40676--40929	95	2.6	95	83	6	314	31	20	16	31	1.94
44680--44722	7	6.6	7	87	12	65	65	0	0	34	0.93
44680--44722	13	3.3	13	100	0	86	65	0	0	34	0.93
51304--51389	26	3.3	26	93	0	145	22	12	27	37	1.91
61565--61610	19	2.4	19	81	0	56	19	15	45	19	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61733--61821	3	30.0	3	83	2	117	59	0	1	39	1.05
62074--62182	42	2.7	40	95	2	191	18	22	11	47	1.80
62233--62656	113	3.8	113	89	1	611	30	18	13	37	1.89
63390--64109	83	8.8	83	95	2	1294	37	22	13	26	1.91
63390--64109	164	4.4	165	95	2	1274	37	22	13	26	1.91
65126--65208	1	83.0	1	73	0	67	0	13	0	86	0.56
65126--65204	15	5.3	15	85	10	90	0	13	0	86	0.58
65125--65207	9	9.0	9	78	13	89	0	14	0	85	0.60
65126--65206	38	2.1	38	88	4	119	0	13	0	86	0.57
65132--65204	31	2.4	31	88	9	114	0	13	0	86	0.58
65126--65208	14	6.2	13	82	12	105	0	13	0	86	0.56

Tables:   1

The End!