Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005544.1 Hibiscus syriacus cultivar Beakdansim tig00012838_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98024

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
801--830
4
7.5
4
100
0
60
26
46
0
26
1.53
1601--1625
10
2.5
10
100
0
50
40
8
44
8
1.63
19266--19290
2
12.5
2
100
0
50
48
0
0
52
1.00
22296--22339
23
1.9
23
95
0
79
45
0
2
52
1.13
24257--24282
2
13.0
2
100
0
52
50
0
0
50
1.00
28942--28976
4
8.8
4
87
12
54
51
0
0
48
1.00
29045--29132
3
29.3
3
100
0
176
32
0
0
67
0.91
29131--29161
3
10.3
3
100
0
62
35
32
0
32
1.58
31402--31502
32
3.2
32
65
10
89
44
10
11
32
1.76
31408--31509
33
3.2
33
65
10
93
41
10
14
33
1.81
31389--31537
64
2.3
64
97
1
282
46
8
12
32
1.70
33559--33782
64
3.5
64
82
2
227
31
20
19
28
1.97
36857--36997
64
2.2
64
82
5
169
34
19
17
29
1.95
43289--43386
36
2.7
36
90
0
160
32
22
22
22
1.98
48830--48972
21
6.8
21
86
8
145
38
23
20
17
1.93
53712--53899
36
5.2
36
87
3
238
36
23
19
20
1.95
54277--54727
51
8.7
51
87
3
591
32
20
25
21
1.97
54277--55001
154
4.6
156
78
10
642
31
19
25
24
1.98
54726--54892
55
3.0
55
92
0
280
29
15
25
29
1.96
54267--55036
51
14.5
54
82
7
333
31
18
24
24
1.98
54395--55051
54
12.3
52
79
10
239
32
18
25
24
1.97
55219--55245
14
1.9
14
100
0
54
81
0
11
7
0.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61563--61660
36
2.7
36
90
0
160
32
22
22
22
1.98
66244--66337
31
3.1
30
83
9
109
46
9
15
27
1.77
66237--66338
30
3.4
30
83
2
123
46
8
16
28
1.77
70449--70494
2
23.0
2
82
8
58
43
2
2
52
1.25
70538--70575
18
2.1
19
85
5
51
21
5
2
71
1.19
82045--82136
27
3.4
26
81
12
89
78
0
13
8
0.97
82045--82128
19
4.6
18
82
12
100
78
0
11
9
0.96
82045--82122
36
2.1
38
90
6
126
79
0
11
8
0.93
82041--82128
8
11.1
8
73
21
62
78
0
11
10
0.97
82041--82128
36
2.5
34
84
15
117
78
0
11
10
0.97
86007--86057
2
26.0
2
80
11
61
43
1
1
52
1.23
86102--86139
18
2.1
19
85
5
51
21
5
2
71
1.19
87690--87759
32
2.3
30
86
11
97
32
10
10
47
1.70
87698--87759
32
1.9
32
100
0
124
35
9
9
45
1.70
87703--87754
16
3.2
16
68
10
52
34
7
9
48
1.65
92962--93071
59
1.9
59
83
3
143
34
18
10
37
1.84
95217--95350
60
2.2
60
81
5
146
47
8
3
41
1.51
95251--95389
65
2.2
60
80
8
154
47
6
3
42
1.46
96157--96238
41
2.1
39
86
10
116
29
7
23
40
1.81

Tables:   1

The End!