genome.fa.s5545.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005545.1 Hibiscus syriacus cultivar Beakdansim tig00012839_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119722

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6783--6908	50	2.5	50	81	2	164	14	35	29	20	1.92
7101--7127	8	3.4	8	100	0	54	40	11	0	48	1.39
8597--8708	50	2.2	50	88	0	161	21	32	33	12	1.91
13636--13842	89	2.3	89	97	0	387	43	22	14	19	1.87
13704--13837	40	3.1	40	63	27	94	45	20	12	21	1.84
14773--14814	20	2.1	20	86	0	57	42	23	21	11	1.86
22672--22776	33	3.3	33	78	6	117	45	22	17	14	1.84
33226--33348	24	5.2	24	78	2	115	56	18	13	10	1.65
33226--33348	47	2.6	47	78	1	120	56	18	13	10	1.65
33538--33591	24	2.2	24	93	0	90	53	18	12	14	1.72
35718--35756	20	2.0	20	84	0	51	30	0	0	69	0.89
35978--36020	19	2.2	20	87	8	61	60	0	2	37	1.10
35986--36036	19	2.8	19	85	5	61	68	0	1	29	1.00
36288--36348	31	2.0	31	90	0	95	36	8	0	55	1.30
42505--42548	23	2.0	22	86	13	63	27	4	2	65	1.23
42623--42648	2	13.0	2	100	0	52	50	0	0	50	1.00
43823--43856	10	3.4	10	87	0	50	20	5	0	73	1.04
47601--47666	22	3.0	22	95	4	125	27	25	27	19	1.99
48367--48407	21	2.0	21	90	0	64	7	31	31	29	1.85
48302--48472	67	2.6	67	83	8	197	18	25	26	29	1.98
48430--48472	21	2.0	21	86	0	59	16	25	27	30	1.97
54493--54559	22	3.0	22	100	0	134	26	26	26	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55198--55372	68	2.6	67	84	7	203	18	26	26	28	1.98
55330--55372	21	2.0	21	86	0	59	16	25	27	30	1.97
62342--62382	7	5.7	7	91	5	55	90	9	0	0	0.46
62342--62374	11	2.9	11	95	4	57	90	9	0	0	0.44
63221--63840	105	5.9	105	96	0	1114	34	25	18	22	1.96
65936--65995	20	2.9	19	77	18	57	26	5	1	66	1.21
65947--65990	23	2.0	22	86	13	63	27	4	2	65	1.23
66096--66122	14	1.9	14	100	0	54	29	11	0	59	1.32
66241--66288	24	2.0	25	84	8	64	10	10	4	75	1.18
72249--72318	36	1.9	37	94	2	124	50	7	18	24	1.72
72342--72399	31	2.0	27	87	12	80	22	12	10	55	1.66
75129--75286	21	7.8	20	72	7	86	38	25	17	18	1.92
75253--75446	20	9.6	20	81	5	221	35	25	19	19	1.95
75253--75446	60	3.2	60	83	0	253	35	25	19	19	1.95
75828--75898	33	2.2	33	89	0	106	11	23	16	47	1.79
75978--76116	21	7.6	20	71	19	108	45	19	24	10	1.82
75978--76120	19	7.8	20	71	22	116	45	18	24	11	1.82
75978--76143	33	4.7	33	88	8	197	45	21	23	10	1.82
76038--76127	14	5.7	14	72	23	72	44	22	24	8	1.81
76030--76143	33	3.5	33	97	0	210	46	21	22	8	1.79
76139--76255	19	6.9	19	71	24	102	10	24	20	44	1.82
76161--76250	14	5.7	14	74	23	81	8	25	22	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76144--76258	33	3.5	33	97	0	221	9	24	20	46	1.80
77954--78334	93	4.1	93	98	0	744	22	12	18	45	1.83
78378--78506	19	7.3	19	75	17	125	45	28	17	8	1.77
78414--78506	33	2.8	32	91	4	150	46	27	18	7	1.76
78378--78506	52	2.5	52	74	14	140	45	28	17	8	1.77
78502--78619	19	6.8	19	76	18	96	10	21	22	46	1.80
78524--78580	14	3.7	14	77	20	60	10	21	22	45	1.82
78507--78598	33	2.8	33	91	1	150	10	21	20	46	1.81
78524--78617	51	1.9	47	85	8	125	9	20	24	45	1.80
78571--78635	19	3.4	19	87	4	87	10	16	27	44	1.81
80561--80596	14	2.6	14	95	0	63	33	0	22	44	1.53
80703--80800	19	5.4	19	84	13	143	45	17	22	14	1.84
80703--80819	53	2.2	53	96	1	218	44	17	23	14	1.86
83138--83162	12	2.1	12	100	0	50	0	28	0	72	0.86
83337--83383	24	2.0	24	87	8	69	38	21	14	25	1.92
84066--84315	20	12.5	20	86	1	268	20	17	24	37	1.93
92021--92064	14	3.2	14	74	6	54	34	9	6	50	1.61
92104--92128	2	12.5	2	100	0	50	48	0	0	52	1.00
92282--92383	51	2.0	51	96	0	186	31	13	7	47	1.72
92675--92714	21	1.9	21	84	0	53	32	2	20	45	1.64
96586--96645	3	20.0	3	86	6	86	33	0	3	63	1.11
96667--96704	18	2.1	18	90	0	58	34	34	15	15	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99877--99938	32	1.9	32	86	0	88	19	12	9	58	1.62
101086--101164	36	2.1	36	84	9	97	22	3	5	68	1.26
101297--101346	17	2.9	17	78	3	55	16	8	4	72	1.24
104375--104426	26	2.0	26	88	7	79	75	3	17	3	1.11
104377--104425	13	3.7	14	81	10	59	75	4	18	2	1.06
104498--104634	68	2.0	69	94	1	240	37	21	13	26	1.91
106203--106398	104	1.9	103	86	1	275	31	23	21	23	1.99
106531--106664	67	2.0	66	85	7	182	32	21	7	38	1.82
107378--107584	110	1.9	110	85	2	290	37	21	17	23	1.94
108965--109044	14	5.8	14	77	18	78	33	2	0	63	1.08
109077--109141	18	3.5	18	73	8	67	26	6	1	66	1.24
109143--109198	19	2.9	19	79	12	53	26	1	0	71	0.96
113495--113608	37	3.1	37	81	6	133	29	15	11	42	1.82
113504--113607	36	2.8	37	85	2	138	32	16	11	39	1.84
113633--113704	31	2.3	32	83	9	94	34	15	13	36	1.87
113645--113703	31	1.9	31	93	3	102	28	13	15	42	1.85
113808--113866	27	2.2	26	79	8	64	28	6	18	45	1.75
113765--113951	63	3.0	63	79	8	177	31	10	13	44	1.78
113991--114069	29	2.7	29	84	9	99	25	7	16	50	1.71
114029--114212	94	2.0	93	86	5	255	29	13	14	43	1.82
114013--114228	94	2.3	93	81	9	251	28	12	15	43	1.84
114716--114793	40	2.0	39	87	7	113	23	34	16	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114444--114936	134	3.7	133	84	5	615	26	30	18	24	1.98
115122--115194	3	24.0	3	86	8	103	34	0	2	63	1.09
115122--115187	19	3.5	19	95	2	116	34	0	3	62	1.11

Tables:   1

The End!