genome.fa.s5548.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005548.1 Hibiscus syriacus cultivar Beakdansim tig00012858_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87475

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3940--3976	2	18.5	2	100	0	74	48	0	0	51	1.00
4129--4229	50	2.0	51	94	1	177	31	13	7	46	1.72
5164--5205	21	2.0	21	100	0	84	19	14	23	42	1.87
8421--8483	3	21.0	3	90	6	101	33	0	1	65	1.03
8505--8542	18	2.1	18	90	0	58	34	34	15	15	1.90
11729--11790	32	1.9	32	86	0	88	19	12	9	58	1.62
12729--12768	14	2.7	14	84	7	53	32	2	0	65	1.06
12833--12898	18	3.5	18	74	11	69	28	6	1	63	1.27
12962--13040	36	2.1	36	84	9	97	22	3	5	68	1.26
13159--13190	9	3.4	10	91	8	50	18	6	0	75	1.01
13159--13208	19	2.6	19	84	12	59	18	6	4	72	1.22
16274--16323	26	1.9	26	88	8	75	74	2	18	6	1.12
16273--16336	13	4.9	13	82	3	67	75	3	17	4	1.11
16409--16546	69	2.0	69	95	0	249	38	21	13	26	1.91
18111--18327	106	2.0	106	84	0	281	32	24	21	21	1.98
18463--18595	67	2.0	66	85	7	180	33	21	7	38	1.81
19316--19522	110	1.9	110	85	2	290	36	21	17	24	1.94
20913--20963	4	12.2	4	80	12	50	27	3	0	68	1.07
20901--20978	21	4.1	19	69	20	63	28	3	0	67	1.07
20911--20978	20	3.4	19	80	15	75	29	2	0	67	1.05
20892--21003	40	2.9	39	75	18	103	32	3	0	63	1.18
20944--20995	14	3.7	14	78	17	54	34	1	0	63	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21273--21319	17	2.7	17	78	12	51	17	12	0	70	1.17
25180--25221	4	11.0	4	80	10	52	50	21	2	26	1.61
25168--25212	20	2.2	20	88	7	65	53	22	2	22	1.57
25184--25214	16	1.9	16	100	0	62	51	19	3	25	1.62
25515--25628	37	3.1	37	81	6	133	29	15	11	42	1.82
25524--25627	36	2.8	37	85	2	138	32	16	11	39	1.84
25653--25724	31	2.3	32	83	9	94	34	15	13	36	1.87
25665--25723	31	1.9	31	93	3	102	28	13	15	42	1.85
25795--25919	64	2.0	63	87	4	180	26	10	14	48	1.75
25788--25973	66	2.9	64	80	4	178	31	9	14	44	1.78
26020--26100	30	2.7	29	84	9	101	24	8	16	50	1.72
26059--26243	94	2.0	94	86	4	257	29	12	14	43	1.82
26043--26259	94	2.3	94	81	8	253	29	12	15	42	1.84
26483--26979	133	3.7	132	85	3	629	25	29	18	25	1.98
26759--26835	39	2.0	38	87	7	111	23	33	16	25	1.96
27176--27254	3	26.0	3	87	7	115	34	0	2	63	1.08
27177--27248	19	3.9	18	94	3	117	34	0	2	62	1.10
30932--30970	19	2.1	19	100	0	78	53	15	20	10	1.70
34956--35119	78	2.1	78	80	6	179	21	26	18	34	1.96
41071--41112	14	3.1	14	76	13	52	54	4	0	40	1.21
41440--41488	26	1.9	26	87	4	73	46	4	4	44	1.41
41615--41652	5	7.8	5	94	2	51	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41953--41988	5	7.2	5	93	0	63	58	0	41	0	0.98
45164--45242	37	2.2	37	90	2	124	25	7	13	53	1.66
47131--47274	60	2.4	60	80	9	152	22	23	26	27	1.99
49967--50031	25	2.8	23	82	15	80	35	0	0	64	0.94
49973--50030	20	2.9	21	78	19	61	36	0	0	63	0.94
50081--50150	33	2.2	33	81	2	88	45	18	7	28	1.76
50287--50353	26	2.6	26	77	13	75	23	5	0	70	1.09
52264--52437	64	2.7	64	81	7	194	34	20	20	25	1.96
52796--52831	12	3.0	12	91	0	63	33	5	25	36	1.79
52847--52920	29	2.6	29	91	2	123	44	16	21	17	1.86
53140--53195	22	2.5	22	100	0	112	32	21	21	25	1.98
53921--53994	37	2.0	36	87	7	105	47	0	4	48	1.20
59230--59259	2	15.0	2	100	0	60	50	0	0	50	1.00
60594--60662	9	7.3	9	79	9	75	15	26	30	27	1.96
60593--60662	19	3.7	19	94	0	113	17	25	30	27	1.97
60656--60696	17	2.4	17	100	0	82	17	43	24	14	1.86
61570--61650	32	2.6	32	82	2	92	16	29	30	23	1.96
61566--61650	31	2.7	31	81	1	98	15	29	29	25	1.96
65055--65424	30	12.6	29	67	12	166	39	9	1	49	1.45
65339--65408	35	2.0	35	86	2	97	37	7	0	55	1.27
65431--65564	29	4.5	29	78	7	117	52	1	7	38	1.39
67705--67770	34	2.0	33	82	14	82	48	4	0	46	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69274--69331	2	29.5	2	96	3	109	50	0	0	50	1.00
70890--70915	2	13.0	2	100	0	52	50	0	0	50	1.00
84355--84478	59	2.1	60	80	7	137	70	3	11	15	1.29
85546--85591	24	2.0	23	86	4	65	54	2	2	41	1.25
86162--86851	248	2.8	246	92	3	1126	24	19	25	30	1.98
86375--86694	164	2.0	159	82	4	390	25	18	26	30	1.98
86144--87132	161	6.1	163	81	6	1042	24	20	25	30	1.98

Tables:   1

The End!