genome.fa.s5549.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005549.1 Hibiscus syriacus cultivar Beakdansim tig00012862_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70951

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1439--1501	19	3.4	19	88	4	101	33	3	26	36	1.73
19367--19399	17	1.9	17	93	0	57	21	30	18	30	1.97
19421--19683	41	6.5	41	92	3	419	19	19	23	37	1.94
19633--19715	19	4.1	20	73	11	62	21	16	24	37	1.94
19632--19724	22	4.4	22	77	9	95	20	18	24	36	1.95
21904--21958	19	2.7	21	75	16	62	32	5	27	34	1.80
21913--21973	19	2.9	19	73	20	50	31	6	29	32	1.83
22389--22456	21	3.4	21	70	12	70	33	27	19	19	1.96
22392--22474	39	2.1	39	88	4	123	37	25	19	18	1.94
22521--22591	20	3.7	20	76	14	85	23	19	26	29	1.98
22499--22612	38	2.9	41	86	7	180	21	17	24	35	1.95
22708--22753	19	2.4	19	85	3	56	21	17	30	30	1.96
22719--22755	19	1.9	19	94	0	65	21	16	29	32	1.95
27010--27106	42	2.3	41	83	1	113	26	21	21	29	1.99
27225--27314	41	2.2	41	89	2	135	25	23	17	33	1.96
27245--27314	22	3.3	21	72	11	72	25	21	17	35	1.95
27385--27467	42	2.0	41	92	2	139	26	24	22	26	2.00
27375--27449	22	3.5	22	67	20	68	26	21	22	29	1.99
27236--27486	134	1.9	134	86	5	364	30	20	21	27	1.98
27607--27676	36	1.9	36	91	0	113	35	22	20	21	1.96
27686--27857	53	3.2	53	86	4	249	30	20	26	22	1.98
28006--28050	20	2.2	20	84	0	63	48	2	0	48	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33153--33182	11	2.7	11	94	0	51	23	50	13	13	1.77
33846--33963	32	3.7	31	81	7	148	33	17	16	32	1.93
33829--33983	63	2.5	63	94	0	274	32	18	16	32	1.94
33794--33980	31	5.9	32	75	13	165	31	18	18	31	1.95
42557--42590	17	2.1	16	88	5	50	76	0	8	14	1.01
45558--45592	15	2.3	15	85	0	52	0	40	31	28	1.57
57314--57456	60	2.4	61	84	6	186	30	23	4	40	1.76
57314--57394	29	2.7	29	72	22	69	30	23	3	41	1.72
57562--57713	60	2.5	59	81	10	184	39	5	21	33	1.76
66477--66510	17	2.1	17	89	10	54	38	11	17	32	1.86

Tables:   1

The End!