genome.fa.s555.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000555.1 Hibiscus syriacus cultivar Beakdansim tig00001082_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81447

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1032--1064	17	1.9	17	93	0	57	15	39	0	45	1.46
6477--6537	23	2.7	23	87	5	88	26	27	26	19	1.99
7737--7773	19	1.9	19	88	0	56	35	10	5	48	1.61
8209--8252	21	2.1	21	86	0	61	15	27	27	29	1.96
14323--14388	3	21.7	3	85	14	91	65	0	1	33	1.02
14588--15042	134	3.4	133	83	5	587	27	16	30	25	1.97
15088--15145	29	2.0	29	89	0	89	44	13	18	22	1.85
15688--15779	39	2.3	39	84	3	112	31	11	18	38	1.87
16102--16137	14	2.7	14	91	8	58	27	0	22	50	1.50
20270--20295	5	5.2	5	100	0	52	80	0	0	19	0.71
22260--22308	3	16.7	3	87	12	75	67	0	2	30	1.02
23098--23150	26	2.0	26	92	0	88	47	1	41	9	1.47
25363--25400	19	2.0	19	89	0	58	47	7	2	42	1.46
31141--31333	41	4.5	41	68	14	154	21	20	22	35	1.96
31170--31221	20	2.6	20	93	0	95	9	21	21	48	1.78
31265--31330	20	3.2	20	74	4	78	16	21	24	37	1.93
31322--31374	22	2.4	22	90	0	88	18	16	26	37	1.93
31472--31515	6	7.5	6	97	2	81	31	52	15	0	1.44
32113--32229	41	2.9	41	89	2	164	34	23	20	22	1.97
32144--32209	21	3.2	21	65	4	62	33	22	19	24	1.97
32160--32233	20	3.7	20	69	3	67	37	20	22	18	1.94
35414--35446	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35858--35910	20	2.7	20	96	0	97	35	18	18	26	1.95
35824--35910	40	2.2	40	83	4	104	39	19	16	25	1.92
37923--38523	298	2.0	299	91	0	970	35	12	24	26	1.92
39466--39521	21	2.7	21	91	5	87	44	21	23	10	1.83
41326--41376	23	2.2	23	86	6	68	29	13	25	31	1.94
43915--43964	25	2.0	25	100	0	100	28	32	8	32	1.86
44971--45002	2	16.0	2	100	0	64	50	0	0	50	1.00
48629--48672	21	2.0	22	82	4	54	45	0	6	47	1.29
49864--49907	18	2.4	19	80	3	54	0	6	36	56	1.26
50447--50514	12	6.3	11	76	20	72	55	0	0	44	0.99
50459--50510	3	17.3	3	83	0	68	57	0	0	42	0.98
50447--50510	21	3.0	21	86	13	96	56	0	0	43	0.99
50664--51150	76	6.4	76	94	0	850	34	22	19	23	1.96
50664--51150	229	2.1	228	93	1	843	34	22	19	23	1.96
51091--51460	185	2.0	184	98	0	713	38	14	14	32	1.87
52009--52063	22	2.5	22	87	0	83	36	14	14	34	1.87
52431--52586	54	2.9	54	89	0	231	20	23	17	37	1.94
54746--55078	113	2.9	114	90	0	533	30	19	16	33	1.93
57233--57317	24	3.5	23	77	17	75	4	20	0	75	0.98
57247--57308	16	3.8	16	79	10	72	4	19	0	75	0.97
57246--57327	18	4.7	18	73	18	66	4	18	0	76	0.95
57246--57328	34	2.4	35	89	2	132	4	18	0	77	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57232--57317	9	10.8	8	73	19	65	4	20	0	74	1.00
57233--57332	7	13.3	7	73	15	76	4	19	0	77	0.93
57299--57336	10	3.6	11	79	13	53	2	15	0	81	0.80
61594--61631	16	2.5	15	83	16	51	71	2	0	26	1.00
61598--61636	14	2.6	14	88	8	51	69	2	0	28	1.02
62275--62318	21	2.0	22	82	4	54	45	0	6	47	1.29
63544--63587	18	2.4	19	80	3	54	0	6	36	56	1.26
64126--64220	12	8.3	11	85	10	95	56	0	0	43	0.99
64138--64216	3	26.3	3	84	0	104	58	0	0	41	0.98
64126--64204	18	4.2	19	85	11	110	58	0	0	41	0.98
64808--64852	23	2.0	23	90	0	72	46	8	11	33	1.70
64767--64929	87	1.9	87	90	2	265	43	9	11	34	1.74
65064--65597	182	2.9	182	95	0	951	28	16	12	42	1.84
66272--66914	257	2.5	257	97	0	1196	44	9	4	41	1.56
68876--68905	6	5.0	6	100	0	60	66	0	0	33	0.92
72656--72693	10	3.5	11	85	10	51	81	0	10	7	0.87
73969--74045	33	2.4	32	78	8	84	45	6	6	41	1.56
74011--74163	39	4.0	39	79	12	183	42	10	3	43	1.55
74011--74163	38	4.0	41	78	13	173	42	10	3	43	1.55
74097--74225	64	2.0	63	96	1	240	44	11	3	41	1.56
74128--74186	26	2.2	27	93	3	102	45	10	3	40	1.54
74138--74204	26	2.6	26	88	2	82	47	10	2	38	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74049--74261	101	2.1	101	89	5	322	43	10	2	43	1.53
74155--74306	37	4.1	37	89	4	207	44	9	2	42	1.51
79446--79480	13	2.6	13	86	4	52	45	11	0	42	1.40

Tables:   1

The End!