genome.fa.s5550.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005550.1 Hibiscus syriacus cultivar Beakdansim tig00012865_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58141

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1480--1528	25	2.0	25	87	0	71	30	16	12	40	1.85
10357--10400	23	1.9	23	86	9	63	54	0	0	45	0.99
10548--10599	20	2.6	19	80	17	61	42	1	1	53	1.23
10722--10838	59	2.0	60	82	1	146	53	0	1	43	1.16
11019--11062	12	3.5	13	84	12	56	45	0	0	54	0.99
12159--12210	22	2.4	22	83	6	61	23	5	3	67	1.29
12159--12219	28	2.3	27	78	10	65	22	4	3	68	1.23
12173--12223	22	2.3	23	83	10	70	23	1	3	70	1.14
12258--12389	2	67.5	2	91	7	209	46	0	1	51	1.15
15412--15491	34	2.4	34	91	4	128	25	50	15	10	1.74
15474--15556	29	2.9	29	87	0	103	20	38	25	15	1.92
15559--15610	26	2.0	26	100	0	104	23	38	19	19	1.93
15625--15668	23	1.9	23	95	0	79	22	20	27	29	1.99
18866--18890	12	2.1	12	100	0	50	44	8	8	40	1.63
20216--21004	399	2.0	396	91	2	1278	34	12	11	41	1.78
25992--26027	11	3.4	11	92	3	56	47	0	0	52	1.00
26090--26149	28	2.2	27	82	8	68	33	5	3	58	1.36
26349--26389	19	2.1	20	86	4	57	53	0	0	46	1.00
26363--26418	22	2.5	22	85	5	69	53	0	0	46	1.00
26359--26433	26	3.0	26	74	12	68	53	1	0	45	1.08
29553--29995	116	3.8	115	91	0	715	21	23	21	33	1.97
29553--30634	231	4.8	231	68	13	796	21	23	21	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29910--30079	84	2.0	85	91	3	281	21	24	15	38	1.92
29995--30634	116	5.5	116	91	1	1023	21	23	21	33	1.97
29794--30427	200	3.0	201	83	8	671	21	24	20	34	1.97
30816--30878	23	2.7	23	90	0	99	47	0	19	33	1.49
30819--30941	23	5.6	23	70	13	98	42	0	21	35	1.59
30846--31026	63	2.9	63	94	0	326	37	1	22	38	1.62
31092--31136	14	3.2	14	96	0	81	26	2	15	55	1.52
31792--31858	21	3.2	21	77	6	73	29	22	28	19	1.98
33638--33725	18	4.9	19	72	17	64	57	1	0	40	1.06
33661--33725	17	3.8	17	74	13	62	58	0	0	41	0.98
33655--33719	33	2.0	33	90	0	103	56	0	0	43	0.99
33667--33718	15	3.3	15	72	15	50	57	0	0	42	0.98
33660--33733	33	2.3	32	86	6	98	62	0	0	37	0.96
45670--45729	21	2.9	19	73	11	57	43	1	13	41	1.54
50380--50413	16	2.1	16	94	0	59	35	26	0	38	1.57
56000--57618	176	9.6	177	78	14	1207	43	13	16	27	1.84
56565--57618	160	6.3	178	73	18	605	43	13	16	27	1.85
56701--57035	170	2.0	163	85	9	446	43	14	14	27	1.85
56917--57500	160	3.8	152	83	10	691	43	11	17	27	1.84
56777--57495	310	2.3	301	87	8	1003	43	12	17	27	1.84

Tables:   1

The End!