Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005551.1 Hibiscus syriacus cultivar Beakdansim tig00012867_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108685

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9256--9289
5
6.8
5
96
0
50
26
32
41
0
1.56
12252--12285
17
2.1
16
88
5
50
14
8
0
76
1.01
19181--19206
3
8.7
3
100
0
52
0
34
0
65
0.93
20886--21003
32
3.8
32
81
7
152
32
16
17
33
1.93
20866--21020
63
2.5
63
94
0
274
32
16
18
32
1.94
20866--21036
31
5.5
31
78
8
175
30
16
18
33
1.94
21667--21696
11
2.7
11
94
0
51
13
13
50
23
1.77
24546--24579
17
2.1
16
88
5
50
14
8
0
76
1.01
26758--26852
3
32.3
3
70
4
50
51
1
3
44
1.24
26765--26859
21
4.7
20
75
8
75
50
1
3
45
1.24
27008--27179
53
3.2
53
88
4
258
22
26
20
30
1.98
27189--27258
36
1.9
36
91
0
113
21
20
22
35
1.96
27398--27480
42
2.0
41
92
2
139
26
22
24
26
2.00
27551--27620
22
3.3
21
72
11
72
35
17
21
25
1.95
27549--27640
41
2.2
42
86
3
141
32
19
22
25
1.97
27379--27629
134
1.9
134
86
5
364
27
21
20
30
1.98
27760--27860
42
2.4
41
81
3
121
29
21
20
27
1.98
32149--32185
19
1.9
19
94
0
65
32
29
16
21
1.95
32292--32408
41
2.9
41
94
0
207
36
23
17
22
1.94
32313--32386
20
3.7
20
77
10
87
31
25
18
24
1.98
32290--32407
21
5.7
21
73
11
100
38
23
16
21
1.93
32434--32521
40
2.2
40
91
0
149
19
19
25
36
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32423--32513
19
4.7
19
71
5
83
21
18
21
37
1.94
32453--32521
21
3.4
21
70
8
70
18
18
27
34
1.95
32952--33008
19
2.7
21
73
15
55
35
26
5
33
1.79
32966--33003
19
2.0
19
89
0
58
34
26
5
34
1.79
35207--35299
22
4.4
22
74
9
95
36
24
18
20
1.95
35248--35511
41
6.5
41
93
3
428
37
23
19
19
1.94
52003--52063
31
1.9
33
90
6
99
37
16
0
45
1.47
53669--53794
19
6.3
19
82
11
126
34
25
3
35
1.75
53670--53793
38
3.1
38
85
9
158
35
25
4
34
1.75
57283--57362
3
26.7
3
87
0
115
61
0
3
35
1.14
57617--58264
113
5.7
112
93
1
924
28
18
12
39
1.88
58827--59068
50
4.8
50
96
0
448
39
21
13
26
1.90
58978--59220
131
1.9
131
99
0
477
36
20
13
29
1.91
59958--60002
18
2.6
17
89
6
65
55
6
6
31
1.52
60331--60367
11
3.4
11
100
0
74
0
10
0
89
0.49
70936--70969
15
2.4
15
90
9
54
61
8
5
23
1.47
73074--73149
3
26.7
3
77
10
79
59
0
3
36
1.16
73080--73148
23
3.0
23
81
12
79
57
0
4
37
1.18
79360--79392
17
2.0
17
88
5
50
60
6
9
24
1.49
81517--81565
24
2.0
25
88
4
73
44
12
0
42
1.41
82424--82520
41
2.4
41
91
3
160
31
12
36
19
1.89
82424--82531
41
2.7
41
87
7
132
30
12
33
23
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84903--85022
33
3.6
33
96
0
213
35
10
6
48
1.63
85757--85784
14
2.0
14
100
0
56
50
7
14
28
1.69
86466--86556
35
2.7
35
89
3
132
43
24
0
31
1.54
86466--86521
19
3.2
19
61
23
50
42
28
0
28
1.56
86551--86628
35
2.2
34
80
10
86
39
0
15
44
1.46
93132--93165
2
17.0
2
100
0
68
50
0
0
50
1.00
97861--97890
14
2.1
14
93
0
51
46
10
6
36
1.64

Tables:   1

The End!