genome.fa.s5554.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005554.1 Hibiscus syriacus cultivar Beakdansim tig00012875_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72422

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11386--11428	13	3.3	13	80	9	52	53	0	0	46	1.00
13720--13754	2	17.5	2	100	0	70	48	0	0	51	1.00
18317--18341	2	12.5	2	100	0	50	48	0	0	52	1.00
24858--25050	67	2.9	68	81	6	221	29	11	22	37	1.89
24846--25055	34	6.2	34	74	7	167	29	10	22	37	1.88
25093--25392	63	4.9	62	78	10	278	25	11	20	43	1.85
25093--25384	126	2.4	121	80	8	315	26	11	19	42	1.85
25396--25599	47	4.3	47	76	3	169	22	14	29	33	1.94
25428--25699	141	1.9	141	79	4	307	22	16	27	32	1.96
25872--25965	47	2.0	46	83	6	118	20	15	34	29	1.94
39225--39270	20	2.3	19	85	14	58	26	15	8	50	1.73
58876--58924	23	2.1	23	88	7	73	57	12	2	28	1.46
60189--60723	239	2.2	240	84	3	684	35	17	16	31	1.91
62242--62299	30	2.0	29	82	3	71	20	15	6	56	1.62
62258--62357	29	3.5	28	74	17	82	17	14	9	60	1.59
62260--62379	58	2.1	58	83	13	149	18	12	9	60	1.58
62258--62387	59	2.2	59	81	14	153	18	13	9	58	1.61
67195--67251	18	3.2	17	78	14	53	71	5	17	5	1.23
69242--69313	3	24.7	3	81	13	53	33	6	0	59	1.24
70635--70705	29	2.4	30	81	9	92	19	19	5	54	1.63
71587--71701	42	2.7	41	87	2	158	33	16	24	26	1.96
71616--71685	22	3.3	22	64	22	58	34	14	21	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71768--71955	54	3.5	54	82	3	236	41	19	9	29	1.83
71768--72164	53	7.5	51	77	12	265	42	19	9	29	1.82
71911--71999	45	2.0	44	91	6	144	47	15	10	26	1.78
71956--72167	106	2.0	106	86	3	300	41	18	8	30	1.80
71768--72216	206	2.2	205	84	5	586	41	19	9	29	1.82
72120--72208	44	2.0	46	91	4	146	38	22	10	29	1.87
72304--72422	54	2.2	54	83	0	157	38	15	9	36	1.79

Tables:   1

The End!