genome.fa.s5556.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005556.1 Hibiscus syriacus cultivar Beakdansim tig00012882_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127369

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2303--2364	23	2.7	23	87	2	90	22	32	24	20	1.98
2323--2387	19	3.3	19	82	10	60	21	30	29	18	1.97
8398--8432	3	11.7	3	100	0	70	31	0	0	68	0.90
8969--8995	14	1.9	14	100	0	54	66	7	0	25	1.17
9807--9906	50	2.0	51	90	2	157	48	12	4	36	1.59
16630--16781	75	2.0	75	100	0	304	55	9	9	26	1.61
17535--17773	51	4.6	51	85	3	300	23	12	14	49	1.77
17522--17773	101	2.4	102	83	5	310	25	12	13	48	1.78
18943--19014	35	2.1	35	89	0	108	36	8	13	41	1.75
19632--19704	24	3.0	24	90	4	76	10	15	24	49	1.76
19642--19697	14	4.3	14	80	17	75	8	14	25	51	1.70
19643--19704	24	2.6	24	97	0	115	9	12	24	53	1.69
20740--20796	16	3.7	16	86	4	73	12	10	17	59	1.60
26199--26259	23	2.7	23	86	0	86	31	22	22	22	1.99
29664--29718	23	2.4	23	84	0	65	38	27	18	16	1.92
31252--31340	24	4.0	23	82	11	114	25	26	17	29	1.98
33351--33628	89	3.1	88	89	2	387	29	24	23	22	1.99
35106--35286	88	2.1	88	100	0	362	24	14	17	43	1.86
36263--36310	12	4.3	11	82	10	53	18	27	37	16	1.92
36263--36310	23	2.1	22	84	3	60	18	27	37	16	1.92
41029--41092	30	2.1	31	91	2	103	39	15	10	34	1.83
45257--45318	29	2.1	29	82	8	72	8	12	3	75	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45275--45299	11	2.3	11	100	0	50	0	16	0	84	0.63
46257--46281	12	2.1	12	100	0	50	8	8	0	84	0.79
47816--47848	12	2.8	12	95	0	57	9	24	6	60	1.49
48005--48128	29	4.3	29	84	7	162	43	18	10	27	1.83
48005--48128	58	2.1	58	92	0	203	43	18	10	27	1.83
50957--50990	2	17.0	2	100	0	68	50	0	0	50	1.00
53169--53374	65	3.2	65	86	4	272	30	15	20	33	1.93
54248--54504	65	3.9	65	82	1	291	29	14	22	33	1.93
55274--55478	65	3.2	65	85	0	275	31	15	20	32	1.94
56302--56558	65	3.9	65	81	1	291	29	14	22	33	1.93
57329--57533	65	3.2	65	86	0	284	31	15	20	32	1.93
57770--57823	23	2.4	22	79	14	56	66	5	12	14	1.41
63366--63399	8	4.2	8	96	0	59	64	0	26	8	1.22
64918--64977	30	2.0	30	93	0	102	26	21	18	33	1.96
67591--67657	30	2.2	30	86	0	89	26	20	11	40	1.88
68588--68651	23	2.8	23	90	0	101	26	23	17	32	1.96
69697--69723	2	13.5	2	100	0	54	51	0	0	48	1.00
76924--76986	25	2.4	25	86	5	81	44	1	3	50	1.27
77751--77791	22	1.9	22	85	5	57	31	2	17	48	1.60
78423--78471	20	2.5	20	96	0	89	22	30	14	32	1.93
85459--85493	2	17.5	2	100	0	70	48	0	0	51	1.00
95600--95642	15	2.8	16	82	3	61	23	27	32	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95790--95826	20	1.9	19	89	10	58	45	10	24	18	1.81
98037--98074	20	1.9	20	84	10	51	39	0	10	50	1.37
99198--99234	19	1.9	19	94	0	65	18	16	21	43	1.88
104028--104072	23	2.0	23	86	0	63	42	6	15	35	1.73
103984--104150	87	1.9	86	95	1	298	40	11	14	32	1.82
104533--105208	182	3.7	181	89	2	975	27	15	12	44	1.83
108675--108716	21	2.0	22	85	4	59	40	14	19	26	1.89
108705--109247	201	2.7	198	83	4	653	33	13	16	36	1.87
108751--110090	200	6.7	197	82	5	1243	29	14	15	40	1.87
108920--110090	200	5.9	197	83	4	1244	29	14	15	40	1.87
110275--110321	24	2.0	24	91	0	76	48	14	2	34	1.56
112744--112787	15	2.9	15	86	0	70	25	4	50	20	1.67
113132--114627	199	7.5	199	89	1	2187	27	14	15	41	1.87
116496--116534	18	2.2	18	95	0	69	5	41	0	53	1.23
117155--117210	24	2.5	21	76	20	60	48	8	1	41	1.45
118923--118961	20	1.9	21	84	5	53	20	15	12	51	1.76
118943--119742	162	4.9	162	84	5	976	26	17	12	43	1.84
118999--120484	317	4.4	323	80	12	1429	27	16	12	43	1.84
119422--120542	182	6.3	184	84	7	1463	27	15	13	43	1.84
119422--120542	351	3.1	352	86	5	1449	27	15	13	43	1.84
119321--120487	533	2.2	519	88	4	1668	27	15	13	43	1.84

Tables:   1

The End!