genome.fa.s5558.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005558.1 Hibiscus syriacus cultivar Beakdansim tig00012886_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52161

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16026--16102	37	2.1	38	95	2	138	28	7	12	50	1.68
23852--23877	2	13.0	2	100	0	52	0	0	50	50	1.00
25501--25529	2	14.5	2	100	0	58	48	0	0	51	1.00
25836--25880	12	3.6	12	85	11	63	44	17	20	17	1.87
25842--25881	12	3.1	13	86	13	64	45	15	17	22	1.85
28173--28212	21	1.9	21	94	0	71	30	15	7	47	1.72
28207--28305	33	3.0	33	94	1	164	32	7	15	45	1.73
28291--28345	13	4.2	13	75	13	58	34	3	12	49	1.59
28758--28791	18	1.9	18	94	5	61	38	11	11	38	1.79
28885--28916	16	2.0	17	88	11	50	43	21	21	12	1.86
29193--29227	18	2.0	17	88	5	52	45	0	2	51	1.16
29556--29615	16	3.6	16	81	18	61	31	15	11	41	1.82
29622--29674	17	3.1	17	86	0	79	41	13	5	39	1.68
32859--32892	15	2.2	16	89	5	52	35	0	0	64	0.94
32843--32952	39	2.8	39	75	13	118	36	10	0	52	1.41
33198--33256	21	2.6	22	85	15	84	42	6	0	50	1.28
33202--33270	25	2.6	27	78	21	83	42	5	0	52	1.25
33198--33272	27	3.1	24	85	12	84	42	5	0	52	1.24
43460--43494	2	18.0	2	88	5	54	48	2	0	48	1.16
48250--48300	22	2.3	22	89	0	84	21	45	13	19	1.85
48706--48794	20	4.5	20	85	1	90	13	16	23	46	1.83
48758--48801	20	2.2	20	91	0	70	11	13	20	54	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50379--50434	21	2.7	21	80	5	60	21	16	33	28	1.95
50672--50737	20	3.3	20	85	2	62	40	28	18	12	1.86
50689--50737	19	2.5	20	93	3	82	36	30	20	12	1.89
50756--50817	33	1.9	33	90	3	99	46	19	17	16	1.84
50821--50859	19	2.0	20	90	5	62	12	15	20	51	1.76
50864--50911	20	2.4	20	96	0	87	14	20	27	37	1.92
50898--50941	20	2.2	20	95	0	79	13	13	22	50	1.77
51415--51484	21	3.3	21	68	5	61	24	35	20	20	1.96
51391--51484	42	2.2	42	84	3	118	23	37	19	20	1.94

Tables:   1

The End!