genome.fa.s5559.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005559.1 Hibiscus syriacus cultivar Beakdansim tig00012893_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115158

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2843--2921	22	3.6	22	78	11	90	24	26	22	26	2.00
2843--2943	43	2.3	43	81	6	125	26	25	21	25	2.00
5383--5422	21	1.9	21	94	0	71	32	30	15	22	1.94
5448--5486	19	2.1	19	95	0	69	20	38	15	25	1.92
5383--5612	64	3.5	65	79	9	204	31	26	15	26	1.96
6693--6723	15	2.1	15	100	0	62	45	12	6	35	1.68
16513--16566	18	3.3	18	63	36	50	29	14	7	48	1.71
16501--16569	30	2.3	30	97	0	129	34	17	5	42	1.73
17068--17097	2	15.0	2	100	0	60	50	0	0	50	1.00
19662--19881	110	2.0	110	96	0	404	40	7	13	39	1.73
20123--20164	22	1.9	22	90	0	66	42	0	7	50	1.30
21557--21603	19	2.5	19	100	0	94	29	23	21	25	1.99
21661--21728	21	3.2	21	93	0	109	23	22	20	33	1.97
21718--21780	20	3.2	20	100	0	126	38	15	20	25	1.92
21710--21808	40	2.5	39	77	8	101	35	18	21	25	1.95
21777--21829	20	2.7	20	87	0	70	28	24	24	22	2.00
22005--22047	22	2.0	22	100	0	86	25	41	13	18	1.88
22445--22497	20	2.7	20	90	0	79	16	18	26	37	1.93
24460--24526	20	3.5	19	82	8	82	19	19	25	35	1.95
25017--25123	21	5.1	21	70	11	69	22	37	18	21	1.94
26525--26586	14	4.3	14	77	6	61	38	0	14	46	1.45
26761--27045	20	14.9	20	80	8	315	27	19	20	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26783--26923	74	1.9	74	94	0	246	25	19	20	34	1.96
26721--27037	94	3.4	94	91	0	463	26	19	20	33	1.97
26876--27017	74	1.9	74	89	0	221	27	17	22	32	1.96
26783--27045	54	4.6	57	79	11	211	27	18	20	33	1.96
29280--29316	14	2.6	14	86	4	56	5	16	21	56	1.59
29506--29559	24	2.2	24	90	0	81	40	20	16	22	1.91
30380--30484	20	5.2	20	88	0	138	27	21	24	25	2.00
30454--30509	20	2.8	21	81	13	64	30	19	16	33	1.94
30503--30548	21	2.2	21	88	0	65	39	19	23	17	1.92
33983--34018	2	18.0	2	100	0	72	50	0	0	50	1.00
38636--38682	23	2.0	23	83	0	58	65	12	2	19	1.35
40260--40299	2	20.5	2	94	5	73	52	0	0	47	1.00
40402--40454	2	27.5	2	88	7	83	50	0	1	47	1.12
41985--42646	107	6.4	106	93	3	1041	22	18	24	34	1.96
42356--42647	98	3.0	98	92	0	494	21	19	23	35	1.96
42477--42636	43	3.4	43	69	18	131	23	18	23	35	1.96
43405--43451	9	5.7	9	83	16	57	0	25	0	74	0.82
43405--43452	18	2.8	17	87	9	71	0	25	0	75	0.81
43410--43454	9	5.0	9	88	0	72	0	26	0	73	0.84
50944--50986	18	2.5	17	85	7	61	25	4	2	67	1.22
56901--56979	2	39.5	2	82	5	88	45	1	6	46	1.36
59743--59778	17	2.1	17	100	0	72	61	5	11	22	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66725--66765	13	3.2	13	75	25	50	29	7	2	60	1.36
66773--67018	43	5.7	43	73	9	160	26	15	5	52	1.64
66756--66932	43	4.2	42	77	6	169	25	13	7	53	1.65
66944--67047	43	2.3	43	81	4	118	30	13	2	52	1.55
67651--67715	21	3.1	21	81	0	76	36	18	12	32	1.88
67685--67724	21	1.9	21	84	0	53	40	20	12	27	1.88
69037--69082	24	1.9	24	82	8	58	36	10	8	43	1.71
69971--70024	20	2.7	20	88	0	72	27	12	18	40	1.87
71569--71648	38	2.1	38	95	2	144	11	11	40	37	1.77
71831--71919	38	2.4	37	84	5	124	11	8	38	41	1.72
71385--71911	269	2.0	266	90	4	839	22	11	28	37	1.89
72442--72553	44	2.5	44	98	0	215	37	17	10	33	1.85
77598--77758	64	2.5	63	83	7	182	34	18	20	26	1.95
77899--77950	22	2.4	22	100	0	104	48	13	23	15	1.80
78251--78283	2	16.5	2	93	0	57	51	3	0	45	1.16
81537--81679	64	2.2	64	85	8	184	34	16	20	27	1.95
83106--83166	28	2.3	26	76	17	63	49	6	3	40	1.45
84497--84538	2	21.0	2	100	0	84	50	0	0	50	1.00
86229--86269	20	2.0	20	95	0	73	14	17	21	46	1.84
109469--109513	22	2.0	22	86	0	63	48	2	2	46	1.26
111410--111524	36	3.2	36	71	18	112	38	19	17	25	1.93
111386--111527	72	2.0	72	88	0	212	38	17	19	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112971--113077	24	4.5	24	73	0	97	48	17	13	20	1.80
112973--113077	48	2.2	48	77	0	111	48	18	13	20	1.80

Tables:   1

The End!