genome.fa.s5560.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005560.1 Hibiscus syriacus cultivar Beakdansim tig00012896_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73746

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1857--1899	21	2.0	21	86	0	59	30	27	25	16	1.97
2578--2622	23	2.0	23	81	0	54	20	24	26	28	1.99
3972--4040	23	3.0	23	84	0	84	26	21	27	24	1.99
4056--4274	103	2.1	105	90	5	343	37	23	12	26	1.91
6580--6616	18	2.1	18	100	0	74	32	16	18	32	1.93
17198--17976	389	2.0	386	89	2	1186	28	13	17	39	1.89
24585--24656	28	2.6	28	74	12	67	47	25	4	23	1.69
24675--24722	22	2.2	21	82	10	60	50	18	0	31	1.48
24681--24723	22	1.9	23	90	4	70	46	20	0	32	1.51
31109--31206	20	4.8	20	77	3	88	36	23	18	21	1.95
31050--31206	41	3.9	41	70	11	126	38	25	17	18	1.93
31193--31363	20	8.6	20	84	5	107	35	26	18	20	1.95
31173--31382	60	3.5	58	80	7	208	37	25	17	20	1.94
31227--31382	20	7.8	20	87	4	174	35	25	17	21	1.95
31193--31382	40	4.8	40	86	5	208	36	25	17	20	1.94
32064--32110	24	2.0	24	87	8	69	25	14	21	38	1.92
32285--32309	12	2.1	12	100	0	50	72	0	28	0	0.86
33401--33740	19	19.4	19	78	17	398	46	18	21	13	1.83
33401--33762	33	10.5	34	83	12	340	46	18	21	13	1.84
33429--33721	52	5.6	52	87	10	381	46	18	21	13	1.83
33558--33612	14	3.6	14	73	21	56	45	23	20	10	1.82
33401--33762	52	6.9	54	86	10	346	46	18	21	13	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33769--33870	19	5.6	19	85	12	151	14	23	17	44	1.86
33977--34013	14	2.6	14	91	0	65	45	21	0	32	1.52
35991--36047	14	3.7	14	77	20	60	45	22	21	10	1.82
35972--36064	33	2.8	33	95	0	168	47	21	20	10	1.80
35935--36069	19	7.6	19	76	16	128	45	23	19	11	1.82
36065--36177	19	6.5	19	72	19	111	7	16	28	47	1.73
36065--36156	33	2.8	33	91	3	141	7	17	28	46	1.75
36129--36193	19	3.4	18	84	2	76	10	15	26	47	1.78
36241--36709	93	5.1	93	99	0	913	46	18	12	21	1.83
38416--38505	14	5.7	14	72	23	72	43	23	24	8	1.82
38408--38522	33	3.5	33	96	0	212	46	20	22	9	1.79
38430--38527	19	5.7	19	70	22	81	44	22	22	10	1.82
38539--38595	14	3.7	14	72	20	51	10	22	22	43	1.84
38553--38641	19	4.9	19	72	15	80	12	22	21	43	1.85
38523--38641	33	3.4	33	86	6	148	10	21	22	44	1.83
38732--38802	33	2.2	33	94	0	124	47	16	23	11	1.79
38984--39038	22	2.5	22	81	0	74	20	16	40	23	1.91
39185--39378	20	9.6	20	79	5	203	19	20	24	35	1.95
39185--39378	60	3.2	60	83	0	244	19	20	24	35	1.95
39365--39442	21	3.8	21	75	3	77	24	17	23	34	1.96
39345--39501	61	2.6	60	79	7	167	19	17	24	38	1.93
39345--39442	41	2.4	41	79	3	117	22	18	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42437--42468	17	1.9	17	93	6	57	46	0	0	53	1.00
45837--45900	31	2.1	31	91	5	103	25	3	39	32	1.71
54718--55102	193	2.0	192	94	4	679	36	17	15	29	1.92
57034--57130	42	2.3	41	82	1	113	25	22	22	28	1.99
57250--57381	42	3.1	42	96	0	237	26	24	17	31	1.97
57423--57447	13	1.9	13	100	0	50	32	24	20	24	1.98
57437--57717	80	3.5	80	90	1	458	30	18	23	28	1.97
57675--57787	42	2.7	41	85	6	147	23	18	23	33	1.97
58199--58394	53	3.7	53	87	2	288	28	20	28	22	1.99
66929--66970	14	3.0	14	82	6	50	47	26	0	26	1.52

Tables:   1

The End!