Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005561.1 Hibiscus syriacus cultivar Beakdansim tig00012899_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108585
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Found at i:4728 original size:12 final size:13
Alignment explanation
Indices: 4705--4746 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
4695 TTTTTAGAAA
4705 TATTATATTGATT
1 TATTATATTGATT
4718 TATTA-ATTGATT
1 TATTATATTGATT
* *
4730 AATTTATATTGAAT
1 TA-TTATATTGATT
4744 TAT
1 TAT
4747 AGGGTAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
12 8 0.33
13 9 0.38
14 7 0.29
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (13 bp):
TATTATATTGATT
Found at i:14296 original size:28 final size:28
Alignment explanation
Indices: 14256--14319 Score: 119
Period size: 28 Copynumber: 2.3 Consensus size: 28
14246 TGTGCTGAGG
14256 TCGCCATGTGATCCCATCCAACTGTAGC
1 TCGCCATGTGATCCCATCCAACTGTAGC
14284 TCGCCATGTGATCCCATCCAACTGTAGC
1 TCGCCATGTGATCCCATCCAACTGTAGC
*
14312 TCGTCATG
1 TCGCCATG
14320 CAAGCACCAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.20, C:0.34, G:0.19, T:0.27
Consensus pattern (28 bp):
TCGCCATGTGATCCCATCCAACTGTAGC
Found at i:22090 original size:4 final size:4
Alignment explanation
Indices: 22068--22141 Score: 89
Period size: 4 Copynumber: 19.0 Consensus size: 4
22058 TTCTTTTTCT
* * *
22068 TACA CACA TATA TATA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
* *
22116 TACA TGCA TACA T--A TATA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA
22142 CACTTTTATT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
2 2 0.03
4 59 0.97
ACGTcount: A:0.49, C:0.22, G:0.01, T:0.28
Consensus pattern (4 bp):
TACA
Found at i:22261 original size:16 final size:16
Alignment explanation
Indices: 22240--22293 Score: 108
Period size: 16 Copynumber: 3.4 Consensus size: 16
22230 TCTTTTTCTT
22240 TACATACATGCATGCA
1 TACATACATGCATGCA
22256 TACATACATGCATGCA
1 TACATACATGCATGCA
22272 TACATACATGCATGCA
1 TACATACATGCATGCA
22288 TACATA
1 TACATA
22294 TGTCATTGTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.26
Consensus pattern (16 bp):
TACATACATGCATGCA
Found at i:22293 original size:4 final size:4
Alignment explanation
Indices: 22240--22293 Score: 54
Period size: 4 Copynumber: 13.5 Consensus size: 4
22230 TCTTTTTCTT
* * * * * *
22240 TACA TACA TGCA TGCA TACA TACA TGCA TGCA TACA TACA TGCA TGCA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
22288 TACA TA
1 TACA TA
22294 TGTCATTGTT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 44 1.00
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.26
Consensus pattern (4 bp):
TACA
Found at i:22398 original size:5 final size:4
Alignment explanation
Indices: 22379--22417 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
22369 TTTTTTTTCT
* *
22379 TACA TACA TACA TAACA TAAA TACA TACA TGCA TACA TA
1 TACA TACA TACA T-ACA TACA TACA TACA TACA TACA TA
22418 TATCATTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
4 26 0.87
5 4 0.13
ACGTcount: A:0.51, C:0.21, G:0.03, T:0.26
Consensus pattern (4 bp):
TACA
Found at i:22532 original size:124 final size:124
Alignment explanation
Indices: 22256--22532 Score: 362
Period size: 124 Copynumber: 2.2 Consensus size: 124
22246 CATGCATGCA
* * * *
22256 TACATACATGCATGCAT-ACATACATGCATGCATACATATGTCATTGTTGGAAGGCTATGCTTGT
1 TACATACATGCATACATAACATACATACATGCATACATATATCATTGTTGGAAGGATATGCTTGT
** * * *
22320 TTTTGACAGTTTTATTCATACTTCTTTACGTTATCAAACTAAGGAAAGTTTTTTTTTCT
66 TTTTGACAGCCTTATTCATACTTCTCTACGTTATCAAACCAAGGAAAGTTTCTTTTTCT
*
22379 TACATACATACATAACATAA-ATACATACATGCATACATATATCATT-TTAGGAAGGATATGCTT
1 TACATACATGCAT-ACATAACATACATACATGCATACATATATCATTGTT-GGAAGGATATGCTT
* * * * *
22442 GTTTTTGGCAGCCTTCTTCATACTTCTCTATGTTATCAAGCCAAGGCAAGTTTCTTTTTCT
64 GTTTTTGACAGCCTTATTCATACTTCTCTACGTTATCAAACCAAGGAAAGTTTCTTTTTCT
* *
22503 TACATACATGCATACGTAACATACGTACAT
1 TACATACATGCATACATAACATACATACAT
22533 ATATGCATTC
Statistics
Matches: 132, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
123 19 0.14
124 112 0.85
125 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.38
Consensus pattern (124 bp):
TACATACATGCATACATAACATACATACATGCATACATATATCATTGTTGGAAGGATATGCTTGT
TTTTGACAGCCTTATTCATACTTCTCTACGTTATCAAACCAAGGAAAGTTTCTTTTTCT
Found at i:24117 original size:4 final size:4
Alignment explanation
Indices: 24108--24137 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
24098 AGCAATTGAG
24108 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
24138 GTAATAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:28894 original size:84 final size:84
Alignment explanation
Indices: 28751--28918 Score: 273
Period size: 84 Copynumber: 2.0 Consensus size: 84
28741 TGAACCTCAC
28751 ATATCTCAGGATATCCAGCACCAAGATTACCAACATGTTAACCAGCGCATGCCAATTAAACCTCA
1 ATATCTCAGGATATCCAGCACCAAGATTACCAACATGTTAACCAGCGCATGCCAATTAAACCTCA
*
28816 GCCTATGGAAGTGAAGACT
66 GCCTATGGAAGTCAAGACT
* * * * *
28835 ATATCTCAGGATATCCAGCACCAAGATTATCAACATGTTAGCCAGTGTATGCCAGTTAAACCTCA
1 ATATCTCAGGATATCCAGCACCAAGATTACCAACATGTTAACCAGCGCATGCCAATTAAACCTCA
*
28900 TCCTATGGAAGTCAAGACT
66 GCCTATGGAAGTCAAGACT
28919 GAAGTCCCCA
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
84 77 1.00
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.24
Consensus pattern (84 bp):
ATATCTCAGGATATCCAGCACCAAGATTACCAACATGTTAACCAGCGCATGCCAATTAAACCTCA
GCCTATGGAAGTCAAGACT
Found at i:30433 original size:2 final size:2
Alignment explanation
Indices: 30428--30453 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
30418 TCTCTCTCTC
30428 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
30454 GTGTAACACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:35932 original size:13 final size:13
Alignment explanation
Indices: 35914--35944 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
35904 TGATCCCTTA
35914 TTCTTCTTCTTCT
1 TTCTTCTTCTTCT
35927 TTCTTCTTCTTCT
1 TTCTTCTTCTTCT
*
35940 CTCTT
1 TTCTT
35945 AATCCAAGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (13 bp):
TTCTTCTTCTTCT
Found at i:37383 original size:14 final size:14
Alignment explanation
Indices: 37364--37420 Score: 84
Period size: 14 Copynumber: 4.3 Consensus size: 14
37354 CGTTCGTGAA
37364 CGTTCGGTTATGTT
1 CGTTCGGTTATGTT
37378 CGTTCGGTTATGTT
1 CGTTCGGTTATGTT
37392 CGTT---TTATGTT
1 CGTTCGGTTATGTT
*
37403 CGTTCGATTATGTT
1 CGTTCGGTTATGTT
37417 CGTT
1 CGTT
37421 TATGTTCATT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
11 11 0.28
14 29 0.73
ACGTcount: A:0.09, C:0.14, G:0.25, T:0.53
Consensus pattern (14 bp):
CGTTCGGTTATGTT
Found at i:37405 original size:25 final size:24
Alignment explanation
Indices: 37365--37440 Score: 100
Period size: 24 Copynumber: 3.1 Consensus size: 24
37355 GTTCGTGAAC
* *
37365 GTTCGGTTATGTTCGTTCGGTTAT
1 GTTCGTTTATGTTCGTTCGATTAT
37389 GTTCGTTTTATGTTCGTTCGATTAT
1 GTTCG-TTTATGTTCGTTCGATTAT
*
37414 GTTCGTTTATGTTCATTC-ATTTAT
1 GTTCGTTTATGTTCGTTCGA-TTAT
37438 GTT
1 GTT
37441 TAACCCAATC
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
23 1 0.02
24 24 0.51
25 22 0.47
ACGTcount: A:0.12, C:0.12, G:0.21, T:0.55
Consensus pattern (24 bp):
GTTCGTTTATGTTCGTTCGATTAT
Found at i:38184 original size:10 final size:10
Alignment explanation
Indices: 38169--38243 Score: 61
Period size: 10 Copynumber: 7.7 Consensus size: 10
38159 GGGTCTCCAA
38169 CGTTTATGTT
1 CGTTTATGTT
38179 CGTTTATGTT
1 CGTTTATGTT
38189 CGTGTTCAT-TT
1 CGT-TT-ATGTT
* **
38200 ATGTTCGTGTT
1 -CGTTTATGTT
38211 CGTTTATGTT
1 CGTTTATGTT
38221 CG----TGTT
1 CGTTTATGTT
38227 CGTTTATGTT
1 CGTTTATGTT
38237 CGTTTAT
1 CGTTTAT
38244 TTATTAAATG
Statistics
Matches: 51, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
6 6 0.12
10 34 0.67
11 7 0.14
12 4 0.08
ACGTcount: A:0.09, C:0.12, G:0.21, T:0.57
Consensus pattern (10 bp):
CGTTTATGTT
Found at i:38200 original size:16 final size:16
Alignment explanation
Indices: 38175--38239 Score: 121
Period size: 16 Copynumber: 4.1 Consensus size: 16
38165 CCAACGTTTA
38175 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
*
38191 TGTTCATTTATGTTCG
1 TGTTCGTTTATGTTCG
38207 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
38223 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
38239 T
1 T
38240 TTATTTATTA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.08, C:0.12, G:0.23, T:0.57
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:38330 original size:16 final size:16
Alignment explanation
Indices: 38309--38341 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
38299 AAAAAAATTT
38309 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
38325 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
38341 T
1 T
38342 CTATTTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.06, C:0.12, G:0.24, T:0.58
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:38826 original size:20 final size:21
Alignment explanation
Indices: 38801--38909 Score: 89
Period size: 21 Copynumber: 5.3 Consensus size: 21
38791 TTTCCCAAAT
*
38801 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
38821 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
* *
38842 TCGTAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* * **
38862 TCGTAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
*
38883 TCGCAATGCGATAATAA-AAAA
1 TCGCAATGCGA-ATTAAGAAAA
38904 TCGCAA
1 TCGCAA
38910 CGAGATACTT
Statistics
Matches: 68, Mismatches: 18, Indels: 5
0.75 0.20 0.05
Matches are distributed among these distances:
20 27 0.40
21 39 0.57
22 2 0.03
ACGTcount: A:0.43, C:0.16, G:0.22, T:0.19
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:38850 original size:41 final size:41
Alignment explanation
Indices: 38801--38911 Score: 170
Period size: 41 Copynumber: 2.7 Consensus size: 41
38791 TTTCCCAAAT
38801 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
* *
38842 TCGTAATGCGAATAAGTAAATCGTAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
*
38883 TCGCAATGCGATAATAA-AAAATCGCAACG
1 TCGCAATGCG--AATAAGTAAATCGCAACG
38912 AGATACTTAC
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
41 48 0.76
42 10 0.16
43 5 0.08
ACGTcount: A:0.42, C:0.16, G:0.23, T:0.19
Consensus pattern (41 bp):
TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
Found at i:38929 original size:20 final size:20
Alignment explanation
Indices: 38904--38956 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
38894 TAATAAAAAA
* *
38904 TCGCAACGAGATACTTACTT
1 TCGCAACGCGATACTGACTT
38924 TCGCAACGCGATACTGACTT
1 TCGCAACGCGATACTGACTT
38944 TCGCAACGCGATA
1 TCGCAACGCGATA
38957 ATACATAATC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (20 bp):
TCGCAACGCGATACTGACTT
Found at i:39476 original size:20 final size:20
Alignment explanation
Indices: 39451--39488 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
39441 TGATTCTCTC
39451 GTTGCGATAGTCATTTTCGT
1 GTTGCGATAGTCATTTTCGT
**
39471 GTTGCGATTTTCATTTTC
1 GTTGCGATAGTCATTTTC
39489 AGAAACTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.16, G:0.21, T:0.50
Consensus pattern (20 bp):
GTTGCGATAGTCATTTTCGT
Found at i:40829 original size:18 final size:18
Alignment explanation
Indices: 40808--40852 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
40798 TCCACTTCGG
*
40808 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
*
40826 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
40844 GAGCCATCA
1 GAGCCATCA
40853 TCTGATCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.44, G:0.16, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:41379 original size:19 final size:20
Alignment explanation
Indices: 41336--41391 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
41326 CACAACACGA
41336 AAATGACTATCGCAACGCGG
1 AAATGACTATCGCAACGCGG
* *
41356 AAATGGCTATCGCAATGC-G
1 AAATGACTATCGCAACGCGG
**
41375 AAATGAAAATCGCAACG
1 AAATGACTATCGCAACG
41392 ACAAAATCGC
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.16
Consensus pattern (20 bp):
AAATGACTATCGCAACGCGG
Found at i:41399 original size:14 final size:14
Alignment explanation
Indices: 41380--41451 Score: 90
Period size: 14 Copynumber: 4.9 Consensus size: 14
41370 ATGCGAAATG
41380 AAAATCGCAACGAC
1 AAAATCGCAACGAC
41394 AAAATCGCAACGAC
1 AAAATCGCAACGAC
* *
41408 AAAATTGCAATGCGAA
1 AAAATCGCAA--CGAC
41424 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
41440 AAAATCGCAACG
1 AAAATCGCAACG
41452 CGAAATGAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
14 34 0.68
16 8 0.16
18 8 0.16
ACGTcount: A:0.49, C:0.24, G:0.17, T:0.11
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:41435 original size:32 final size:33
Alignment explanation
Indices: 41394--41468 Score: 125
Period size: 32 Copynumber: 2.3 Consensus size: 33
41384 TCGCAACGAC
* *
41394 AAAATCGCAACGACAAAATTGCAATGCGAAATG
1 AAAATCGCAACGACAAAATCGCAACGCGAAATG
41427 -AAATCGCAACGACAAAATCGCAACGCGAAATG
1 AAAATCGCAACGACAAAATCGCAACGCGAAATG
41459 AAAATCGCAA
1 AAAATCGCAA
41469 TGCGATTTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
32 30 0.77
33 9 0.23
ACGTcount: A:0.49, C:0.21, G:0.17, T:0.12
Consensus pattern (33 bp):
AAAATCGCAACGACAAAATCGCAACGCGAAATG
Found at i:41507 original size:14 final size:14
Alignment explanation
Indices: 41485--41542 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
41475 TTGTGTTTCG
*
41485 CGTTACGATTTTGT
1 CGTTGCGATTTTGT
*
41499 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
41515 CGCGTTGCGATTTTGT
1 --CGTTGCGATTTTGT
41531 CGTTGCGATTTT
1 CGTTGCGATTTT
41543 CATTTCGCAT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
14 22 0.59
16 4 0.11
18 11 0.30
ACGTcount: A:0.10, C:0.17, G:0.24, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:41549 original size:33 final size:32
Alignment explanation
Indices: 41480--41558 Score: 131
Period size: 32 Copynumber: 2.4 Consensus size: 32
41470 GCGATTTGTG
*
41480 TTTCGCGTTACGATTTTGTCGTTGCGATTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGCGATTTCA
41512 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGCGA-TTTCA
*
41545 TTTCGCATTGCGAT
1 TTTCGCGTTGCGAT
41559 AGCTATTTCC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
32 26 0.59
33 18 0.41
ACGTcount: A:0.11, C:0.19, G:0.23, T:0.47
Consensus pattern (32 bp):
TTTCGCGTTGCGATTTTGTCGTTGCGATTTCA
Found at i:41557 original size:19 final size:18
Alignment explanation
Indices: 41499--41599 Score: 93
Period size: 19 Copynumber: 5.6 Consensus size: 18
41489 ACGATTTTGT
41499 CGTTGCGATTTCATTTCG
1 CGTTGCGATTTCATTTCG
*
41517 CGTTGCGATTT--TGT--
1 CGTTGCGATTTCATTTCG
41531 CGTTGCGATTTTCATTTCG
1 CGTTGCGA-TTTCATTTCG
* **
41550 CATTGCGATAGCTATTTCCG
1 CGTTGCGATTTC-ATTT-CG
*
41570 CGTTGCGATAGTCATTTCG
1 CGTTGCGAT-TTCATTTCG
41589 CGTTGCGATTT
1 CGTTGCGATTT
41600 TAAGTTTCGT
Statistics
Matches: 66, Mismatches: 9, Indels: 16
0.73 0.10 0.18
Matches are distributed among these distances:
14 8 0.12
15 3 0.05
16 2 0.03
17 2 0.03
18 14 0.21
19 22 0.33
20 14 0.21
21 1 0.02
ACGTcount: A:0.13, C:0.21, G:0.24, T:0.43
Consensus pattern (18 bp):
CGTTGCGATTTCATTTCG
Found at i:43613 original size:13 final size:13
Alignment explanation
Indices: 43595--43646 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 13
43585 CGAAATGGCT
43595 ATCGCAACGAGAA
1 ATCGCAACGAGAA
43608 ATCGCAATGCGAAATGAA
1 ATCGCAA--CG--A-GAA
43626 ATCGCAACGAGAAA
1 ATCGCAACGAG-AA
43640 ATCGCAA
1 ATCGCAA
43647 TGCGATTTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 11
0.75 0.00 0.25
Matches are distributed among these distances:
13 8 0.24
14 10 0.30
15 2 0.06
16 2 0.06
17 1 0.03
18 10 0.30
ACGTcount: A:0.46, C:0.21, G:0.21, T:0.12
Consensus pattern (13 bp):
ATCGCAACGAGAA
Found at i:43620 original size:32 final size:32
Alignment explanation
Indices: 43576--43651 Score: 109
Period size: 32 Copynumber: 2.4 Consensus size: 32
43566 AAAACAGACT
* **
43576 ATCGCAACGCGAAATGGCTATCGCAACGAG-AA
1 ATCGCAATGCGAAAT-GAAATCGCAACGAGAAA
43608 ATCGCAATGCGAAATGAAATCGCAACGAGAAA
1 ATCGCAATGCGAAATGAAATCGCAACGAGAAA
43640 ATCGCAATGCGA
1 ATCGCAATGCGA
43652 TTTTCATTTC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
31 12 0.30
32 28 0.70
ACGTcount: A:0.41, C:0.22, G:0.24, T:0.13
Consensus pattern (32 bp):
ATCGCAATGCGAAATGAAATCGCAACGAGAAA
Found at i:43628 original size:18 final size:17
Alignment explanation
Indices: 43604--43651 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 17
43594 TATCGCAACG
43604 AGAAATCGCAATGCGAA
1 AGAAATCGCAATGCGAA
*
43621 ATGAAATCGCAA--CGAG
1 A-GAAATCGCAATGCGAA
43637 A-AAATCGCAATGCGA
1 AGAAATCGCAATGCGA
43652 TTTTCATTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
14 9 0.33
16 7 0.26
17 1 0.04
18 10 0.37
ACGTcount: A:0.46, C:0.19, G:0.23, T:0.12
Consensus pattern (17 bp):
AGAAATCGCAATGCGAA
Found at i:43746 original size:19 final size:19
Alignment explanation
Indices: 43672--43745 Score: 112
Period size: 19 Copynumber: 3.8 Consensus size: 19
43662 GCATTGCGAT
* *
43672 TTTCTCGTTGCGATAACCA
1 TTTCGCGTTGCGATAGCCA
43691 TTTTCGCGTTGCGATAGCCA
1 -TTTCGCGTTGCGATAGCCA
*
43711 TTTCGCGTTGCGATAGTCA
1 TTTCGCGTTGCGATAGCCA
43730 TTTCGCGTTGCGATAG
1 TTTCGCGTTGCGATAG
43746 TTAAATGAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
19 34 0.67
20 17 0.33
ACGTcount: A:0.16, C:0.23, G:0.24, T:0.36
Consensus pattern (19 bp):
TTTCGCGTTGCGATAGCCA
Found at i:44825 original size:24 final size:24
Alignment explanation
Indices: 44798--44851 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
44788 GTATTCGAAA
* *
44798 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACACGGAC
*
44822 TTTGATATTGGTCAATACACGGAT
1 TTTGATATTGGTCAATACACGGAC
44846 TTTGAT
1 TTTGAT
44852 GAAGTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (24 bp):
TTTGATATTGGTCAATACACGGAC
Found at i:45043 original size:12 final size:12
Alignment explanation
Indices: 45026--45050 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
45016 ATATAATCCT
45026 GAAGAAGAAAAA
1 GAAGAAGAAAAA
45038 GAAGAAGAAAAA
1 GAAGAAGAAAAA
45050 G
1 G
45051 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:45390 original size:33 final size:33
Alignment explanation
Indices: 45348--45474 Score: 193
Period size: 33 Copynumber: 3.8 Consensus size: 33
45338 GGAAATTACT
45348 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* **
45381 ATCGCAATGCGAAATGAATATCGCAACGCTA-A
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
45413 TTTCGCAATGCGAAATGAAAATCGCAACGAGGGA
1 -ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
45447 ATCGCAATGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
45475 CGAATTTAAT
Statistics
Matches: 83, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
32 1 0.01
33 81 0.98
34 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.23, T:0.16
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:45455 original size:66 final size:66
Alignment explanation
Indices: 45349--45481 Score: 239
Period size: 66 Copynumber: 2.0 Consensus size: 66
45339 GAAATTACTA
* *
45349 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAATATCGCAACGCTAAT
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
45414 T
66 T
*
45415 TCGCAATGCGAAATGAAAATCGCAACGAGGGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
45480 T
66 T
45481 T
1 T
45482 AATTTCGCGT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.41, C:0.20, G:0.23, T:0.17
Consensus pattern (66 bp):
TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
T
Found at i:45496 original size:19 final size:19
Alignment explanation
Indices: 45474--45536 Score: 81
Period size: 19 Copynumber: 3.3 Consensus size: 19
45464 AAATCGCAAC
*
45474 GCGAATTTAATTTCGCGTT
1 GCGATTTTAATTTCGCGTT
*
45493 GCGATTTTCATTTTCGCGTT
1 GCGATTTT-AATTTCGCGTT
* *
45513 GCGATTTTCATTTCGCATT
1 GCGATTTTAATTTCGCGTT
45532 GCGAT
1 GCGAT
45537 AGTACTTTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
19 20 0.53
20 18 0.47
ACGTcount: A:0.16, C:0.19, G:0.21, T:0.44
Consensus pattern (19 bp):
GCGATTTTAATTTCGCGTT
Found at i:45509 original size:20 final size:19
Alignment explanation
Indices: 45483--45536 Score: 90
Period size: 20 Copynumber: 2.8 Consensus size: 19
45473 CGCGAATTTA
45483 ATTTCGCGTTGCGATTTTC
1 ATTTCGCGTTGCGATTTTC
45502 ATTTTCGCGTTGCGATTTTC
1 A-TTTCGCGTTGCGATTTTC
*
45522 ATTTCGCATTGCGAT
1 ATTTCGCGTTGCGAT
45537 AGTACTTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
19 14 0.42
20 19 0.58
ACGTcount: A:0.13, C:0.20, G:0.20, T:0.46
Consensus pattern (19 bp):
ATTTCGCGTTGCGATTTTC
Found at i:45662 original size:14 final size:14
Alignment explanation
Indices: 45643--45679 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
45633 CATCAATTAA
45643 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
45657 ACAAATCACCTTTT
1 ACAAATCAACTTTT
45671 ACAAATCAA
1 ACAAATCAA
45680 TTAAACAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:47274 original size:92 final size:93
Alignment explanation
Indices: 47115--47291 Score: 322
Period size: 92 Copynumber: 1.9 Consensus size: 93
47105 AACAGACATG
47115 ATATTTAAACAGTGAAAACAAAGATAAATATATATTGCGAAAGTAAACTATTCTTCTTCTGCAAA
1 ATATTTAAACAGTGAAAACAAAGATAAATATATATTGCGAAAGTAAACTATTCTTCTTCTGCAAA
47180 TTGAAACTTGAATGGATTGCATTACTTCA
66 TTGAAACTTGAAT-GATTGCATTACTTCA
*
47209 ATATTTAAACAGTGAAAACAAAGAT-AA-ATATCTTGCGAAAGTAAACTATTCTTCTTCTGCAAA
1 ATATTTAAACAGTGAAAACAAAGATAAATATATATTGCGAAAGTAAACTATTCTTCTTCTGCAAA
47272 TTGAAACTTGAATGATTGCA
66 TTGAAACTTGAATGATTGCA
47292 AAACCAAAGA
Statistics
Matches: 82, Mismatches: 1, Indels: 3
0.95 0.01 0.03
Matches are distributed among these distances:
91 7 0.09
92 48 0.59
93 2 0.02
94 25 0.30
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.32
Consensus pattern (93 bp):
ATATTTAAACAGTGAAAACAAAGATAAATATATATTGCGAAAGTAAACTATTCTTCTTCTGCAAA
TTGAAACTTGAATGATTGCATTACTTCA
Found at i:49020 original size:20 final size:19
Alignment explanation
Indices: 48989--49166 Score: 94
Period size: 20 Copynumber: 9.8 Consensus size: 19
48979 TCTTTTGGTT
48989 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGA
* *
49008 GATAATGAGAATCGCAACGCG
1 GA-AATGAAAATCGCAACG-A
**
49029 GAAATGACTATCGCAACGA
1 GAAATGAAAATCGCAACGA
*
49048 G--A-G--AATCGCAACGC
1 GAAATGAAAATCGCAACGA
*
49062 GAAAT-AACTATCG---CGA
1 GAAATGAA-AATCGCAACGA
** * *
49078 -CCA-GACAATCGCAACGC
1 GAAATGAAAATCGCAACGA
*
49095 GAAATGAAAATCGCAACCGC
1 GAAATGAAAATCGCAA-CGA
* *
49115 GAAATAAAAATCGCAACGC
1 GAAATGAAAATCGCAACGA
*
49134 GAAATG-AAATCGCAACGC
1 GAAATGAAAATCGCAACGA
*
49152 G-AATAAAAATCGCAA
1 GAAATGAAAATCGCAA
49167 TGCGATTTTG
Statistics
Matches: 123, Mismatches: 20, Indels: 33
0.70 0.11 0.19
Matches are distributed among these distances:
14 14 0.11
15 2 0.02
16 4 0.03
17 6 0.05
18 23 0.19
19 25 0.20
20 47 0.38
21 2 0.02
ACGTcount: A:0.45, C:0.22, G:0.21, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGA
Found at i:49072 original size:33 final size:33
Alignment explanation
Indices: 49014--49112 Score: 128
Period size: 33 Copynumber: 3.0 Consensus size: 33
49004 ACGAGATAAT
* *
49014 GAGAATCGCAACGCGGAAATGACTATCGCAACGA
1 GAGAATCGCAACGC-GAAATAACTATCGCAACCA
*
49048 GAGAATCGCAACGCGAAATAACTATCGCGACCA
1 GAGAATCGCAACGCGAAATAACTATCGCAACCA
* *
49081 GACAATCGCAACGCGAAATGAA-AATCGCAACC
1 GAGAATCGCAACGCGAAAT-AACTATCGCAACC
49113 GCGAAATAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
33 42 0.72
34 16 0.28
ACGTcount: A:0.40, C:0.26, G:0.22, T:0.11
Consensus pattern (33 bp):
GAGAATCGCAACGCGAAATAACTATCGCAACCA
Found at i:49127 original size:39 final size:36
Alignment explanation
Indices: 49084--49171 Score: 140
Period size: 36 Copynumber: 2.4 Consensus size: 36
49074 GCGACCAGAC
49084 AATCGCAACGCGAAATGAAAATCGCAACCGCGAAATAAA
1 AATCGCAACGCGAAATG-AAATCGCAA-CGCG-AATAAA
49123 AATCGCAACGCGAAATGAAATCGCAACGCGAATAAA
1 AATCGCAACGCGAAATGAAATCGCAACGCGAATAAA
*
49159 AATCGCAATGCGA
1 AATCGCAACGCGA
49172 TTTTGGTTTC
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
36 18 0.38
37 4 0.08
38 9 0.19
39 17 0.35
ACGTcount: A:0.47, C:0.23, G:0.19, T:0.11
Consensus pattern (36 bp):
AATCGCAACGCGAAATGAAATCGCAACGCGAATAAA
Found at i:49161 original size:18 final size:18
Alignment explanation
Indices: 49084--49171 Score: 106
Period size: 18 Copynumber: 4.7 Consensus size: 18
49074 GCGACCAGAC
*
49084 AATCGCAACGCGAAATGAA
1 AATCGCAACGCG-AATAAA
49103 AATCGCAACCGCGAAATAAA
1 AATCGCAA-CGCG-AATAAA
*
49123 AATCGCAACGCGAA-ATGA
1 AATCGCAACGCGAATA-AA
49141 AATCGCAACGCGAATAAA
1 AATCGCAACGCGAATAAA
*
49159 AATCGCAATGCGA
1 AATCGCAACGCGA
49172 TTTTGGTTTC
Statistics
Matches: 62, Mismatches: 4, Indels: 7
0.85 0.05 0.10
Matches are distributed among these distances:
17 1 0.02
18 30 0.48
19 13 0.21
20 18 0.29
ACGTcount: A:0.47, C:0.23, G:0.19, T:0.11
Consensus pattern (18 bp):
AATCGCAACGCGAATAAA
Found at i:49201 original size:18 final size:18
Alignment explanation
Indices: 49167--49246 Score: 78
Period size: 18 Copynumber: 4.5 Consensus size: 18
49157 AAAATCGCAA
*
49167 TGCGATTTTGGTTTCGCGT
1 TGCGATTTT-ATTTCGCGT
49186 TGCGATTTTATTTCGCGT
1 TGCGATTTTATTTCGCGT
*
49204 TGCGA--TTA--TCTCGT
1 TGCGATTTTATTTCGCGT
*
49218 TGCGATAGTTATTTCCGCGT
1 TGCGAT-TTTATTT-CGCGT
49238 TGCGATTTT
1 TGCGATTTT
49247 CATTCTCGAA
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
14 10 0.20
16 3 0.06
17 3 0.06
18 13 0.25
19 12 0.24
20 10 0.20
ACGTcount: A:0.11, C:0.17, G:0.25, T:0.46
Consensus pattern (18 bp):
TGCGATTTTATTTCGCGT
Found at i:49832 original size:21 final size:21
Alignment explanation
Indices: 49799--49899 Score: 59
Period size: 20 Copynumber: 4.9 Consensus size: 21
49789 TGCGAAAGTA
* * *
49799 AGTATCTCGTTGCGATTTTTT
1 AGTATCGCATTGCGATTTTTC
* **
49820 ATTATCGCATTGCGA-TAGTC
1 AGTATCGCATTGCGATTTTTC
*
49840 AGTATCGCATTGCGATTTTCCC
1 AGTATCGCATTGCGATTTT-TC
* *
49862 AAT-TCGCGTTGCGATTTACTT-
1 AGTATCGCATTGCGATTT--TTC
49883 A-T-TCGCATTGCGATTTT
1 AGTATCGCATTGCGATTTT
49900 CCCAATTCGC
Statistics
Matches: 62, Mismatches: 14, Indels: 11
0.71 0.16 0.13
Matches are distributed among these distances:
18 1 0.02
20 30 0.48
21 27 0.44
22 3 0.05
23 1 0.02
ACGTcount: A:0.19, C:0.20, G:0.19, T:0.43
Consensus pattern (21 bp):
AGTATCGCATTGCGATTTTTC
Found at i:49855 original size:20 final size:20
Alignment explanation
Indices: 49762--49855 Score: 89
Period size: 20 Copynumber: 4.7 Consensus size: 20
49752 CGCTATGTAA
*
49762 ATCGCGTTGCGAAAGTCAGT
1 ATCGCGTTGCGATAGTCAGT
* *
49782 ATCGCGTTGCGAAAGTAAGT
1 ATCGCGTTGCGATAGTCAGT
* ** * *
49802 ATCTCGTTGCGATTTTTTATT
1 ATCGCGTTGCGA-TAGTCAGT
*
49823 ATCGCATTGCGATAGTCAGT
1 ATCGCGTTGCGATAGTCAGT
*
49843 ATCGCATTGCGAT
1 ATCGCGTTGCGAT
49856 TTTCCCAATT
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 47 0.78
21 13 0.22
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.34
Consensus pattern (20 bp):
ATCGCGTTGCGATAGTCAGT
Found at i:49874 original size:41 final size:41
Alignment explanation
Indices: 49783--49917 Score: 139
Period size: 41 Copynumber: 3.3 Consensus size: 41
49773 AAAGTCAGTA
* * * ** *
49783 TCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTT-TTATT
1 TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* *
49823 ATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 -TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* **
49865 TCGCGTTGCGAT-TTACTTATTCGCATTGCGATTTTCCCAAT
1 TCGCGTTGCGATAGTAAGTA-TCGCATTGCGATTTTCCCAAT
49906 TCGCGTTGCGAT
1 TCGCGTTGCGAT
49918 TTACTTATTC
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
40 3 0.04
41 74 0.94
42 2 0.03
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.39
Consensus pattern (41 bp):
TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
Found at i:49909 original size:21 final size:20
Alignment explanation
Indices: 49844--49936 Score: 96
Period size: 20 Copynumber: 4.5 Consensus size: 20
49834 ATAGTCAGTA
*
49844 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACCAAT
* **
49865 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACCAAT
*
49885 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACCAAT
* **
49906 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACCAAT
49926 TCGCATTGCGA
1 TCGCATTGCGA
49937 ATTGGGAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 32 0.55
21 26 0.45
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (20 bp):
TCGCATTGCGATTTACCAAT
Found at i:49918 original size:41 final size:41
Alignment explanation
Indices: 49844--49936 Score: 186
Period size: 41 Copynumber: 2.3 Consensus size: 41
49834 ATAGTCAGTA
49844 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
49885 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
49926 TCGCATTGCGA
1 TCGCATTGCGA
49937 ATTGGGAAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (41 bp):
TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
Found at i:50654 original size:7 final size:7
Alignment explanation
Indices: 50644--50672 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
50634 ACAAAAAACA
50644 TTCCTTT
1 TTCCTTT
50651 TTCCTTT
1 TTCCTTT
50658 TTCCTTT
1 TTCCTTT
50665 TTCCTTT
1 TTCCTTT
50672 T
1 T
50673 GATTTCAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (7 bp):
TTCCTTT
Found at i:60267 original size:2 final size:2
Alignment explanation
Indices: 60214--60254 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
60204 TATTATCTTA
60214 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60255 GTTCGATATA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:60713 original size:22 final size:22
Alignment explanation
Indices: 60688--60729 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
60678 TTTTTCTTAT
* *
60688 TTTATACCTTTCTTTTTATTGA
1 TTTATAACTTTATTTTTATTGA
*
60710 TTTATAATTTTATTTTTATT
1 TTTATAACTTTATTTTTATT
60730 TAAATAAAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.21, C:0.07, G:0.02, T:0.69
Consensus pattern (22 bp):
TTTATAACTTTATTTTTATTGA
Found at i:62800 original size:16 final size:16
Alignment explanation
Indices: 62765--62823 Score: 93
Period size: 16 Copynumber: 3.8 Consensus size: 16
62755 GTTTACTTCA
* *
62765 GAATGATT-AAGTATT
1 GAATGATTCAAATACT
62780 GAATGATTCAAATACT
1 GAATGATTCAAATACT
62796 GAATGATTCAAATACT
1 GAATGATTCAAATACT
62812 GAATGATTCAAA
1 GAATGATTCAAA
62824 GGCTCTTAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
15 8 0.20
16 33 0.80
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.32
Consensus pattern (16 bp):
GAATGATTCAAATACT
Found at i:63418 original size:20 final size:21
Alignment explanation
Indices: 63372--63418 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
63362 ACCATTTTTT
* *
63372 TTTTGAAAAACAATTATGTAT
1 TTTTAAAAAACAATTATGTAC
*
63393 TATTTAAAAAACGATTATG-AC
1 T-TTTAAAAAACAATTATGTAC
63414 TTTTA
1 TTTTA
63419 TTTGGAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 4 0.18
21 3 0.14
22 15 0.68
ACGTcount: A:0.43, C:0.06, G:0.09, T:0.43
Consensus pattern (21 bp):
TTTTAAAAAACAATTATGTAC
Found at i:65481 original size:21 final size:23
Alignment explanation
Indices: 65432--65483 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
65422 AAATTTTCTG
*
65432 TTTTTTTATCATATATGCGTATT
1 TTTTTTTATCATATACGCGTATT
* * *
65455 TATTTTTATTATATACG-GTTTT
1 TTTTTTTATCATATACGCGTATT
65477 TTTTTTT
1 TTTTTTT
65484 CTTTTTCATT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 10 0.42
23 14 0.58
ACGTcount: A:0.19, C:0.06, G:0.08, T:0.67
Consensus pattern (23 bp):
TTTTTTTATCATATACGCGTATT
Found at i:66937 original size:37 final size:37
Alignment explanation
Indices: 66880--66981 Score: 132
Period size: 37 Copynumber: 2.8 Consensus size: 37
66870 CCTTTTCGTC
*
66880 CTACTAGGATTCAAACTCCTAAAAATAAGATAGAATT
1 CTACTAAGATTCAAACTCCTAAAAATAAGATAGAATT
* * * *
66917 TTGCTAAGATTCAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAAGATTCAAACTCCTAAAAATAAGATAGAATT
* * *
66954 CTACTATGATTTAAACTCCTAAAGATAA
1 CTACTAAGATTCAAACTCCTAAAAATAA
66982 TATCCACAAG
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 54 1.00
ACGTcount: A:0.43, C:0.16, G:0.12, T:0.29
Consensus pattern (37 bp):
CTACTAAGATTCAAACTCCTAAAAATAAGATAGAATT
Found at i:69466 original size:3 final size:3
Alignment explanation
Indices: 69452--69494 Score: 54
Period size: 3 Copynumber: 15.0 Consensus size: 3
69442 AATGTAAATG
* *
69452 TAA TAT TAA TAA TAA T-A TAA TAA TAA TAA TGA -AA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
69495 ATTAAAATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
2 3 0.09
3 31 0.91
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:69477 original size:14 final size:14
Alignment explanation
Indices: 69458--69494 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
69448 AATGTAATAT
69458 TAATAATAAT-ATAA
1 TAATAATAATGA-AA
69472 TAATAATAATGAAA
1 TAATAATAATGAAA
69486 TAATAATAA
1 TAATAATAA
69495 ATTAAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 21 0.95
15 1 0.05
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (14 bp):
TAATAATAATGAAA
Found at i:69478 original size:17 final size:17
Alignment explanation
Indices: 69452--69494 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
69442 AATGTAAATG
*
69452 TAATATTAATAAT-AATA
1 TAATAATAATAATGAA-A
69469 TAATAATAATAATGAAA
1 TAATAATAATAATGAAA
69486 TAATAATAA
1 TAATAATAA
69495 ATTAAAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 22 0.92
18 2 0.08
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (17 bp):
TAATAATAATAATGAAA
Found at i:70221 original size:13 final size:13
Alignment explanation
Indices: 70200--70254 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
70190 AAGTTCGATA
*
70200 AATTCAAATACTT
1 AATTGAAATACTT
70213 AATTGAAATACTT
1 AATTGAAATACTT
* *
70226 AATT-AACTCAACAT
1 AATTGAAAT--ACTT
70240 AATTGAAATACTT
1 AATTGAAATACTT
70253 AA
1 AA
70255 ATACTTCCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
12 3 0.09
13 21 0.62
14 7 0.21
15 3 0.09
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.35
Consensus pattern (13 bp):
AATTGAAATACTT
Found at i:70336 original size:32 final size:33
Alignment explanation
Indices: 70240--70338 Score: 164
Period size: 33 Copynumber: 3.0 Consensus size: 33
70230 AACTCAACAT
* * *
70240 AATTGAAATACTTAAATACTTCCAAGTTTGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
70273 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
70306 AATTCAAATACTTAAAAACTT-CAAGTTCGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
70338 A
1 A
70339 TTGAAACAAA
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
32 12 0.19
33 51 0.81
ACGTcount: A:0.45, C:0.15, G:0.07, T:0.32
Consensus pattern (33 bp):
AATTCAAATACTTAAAAACTTCCAAGTTCGATA
Found at i:72679 original size:22 final size:23
Alignment explanation
Indices: 72636--72688 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
72626 TTAAACCCAG
***
72636 ACCGGTTTTTTTTTCGGATAAAA
1 ACCGGTTTTTTAACCGGATAAAA
*
72659 ACCGGTTTTTTAACCGGTAAAAAA
1 ACCGGTTTTTTAACCGG-ATAAAA
72683 ACCGGT
1 ACCGGT
72689 CTGGGTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
23 14 0.56
24 11 0.44
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (23 bp):
ACCGGTTTTTTAACCGGATAAAA
Found at i:76225 original size:20 final size:20
Alignment explanation
Indices: 76202--76253 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
76192 ACCAACTTAG
76202 GAGTATCGATACCCCTATTA
1 GAGTATCGATACCCCTATTA
*
76222 GAGTATCGATACCCTTATTA
1 GAGTATCGATACCCCTATTA
76242 GAGTATCGATAC
1 GAGTATCGATAC
76254 TGACAACTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (20 bp):
GAGTATCGATACCCCTATTA
Found at i:80849 original size:27 final size:27
Alignment explanation
Indices: 80794--80864 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 27
80784 TGGTAGATGA
* * *
80794 GCCAAATTGTTTTTTTTCAAGTTCGAGG
1 GCCAAATTG-ATTTTTTAAAGTTCAAGG
*
80822 GCCAAATTGATTTTTTAAAGTTTAAGG
1 GCCAAATTGATTTTTTAAAGTTCAAGG
** *
80849 GCTTATTTGATTTTTT
1 GCCAAATTGATTTTTT
80865 TAAAAATAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
27 27 0.75
28 9 0.25
ACGTcount: A:0.24, C:0.10, G:0.18, T:0.48
Consensus pattern (27 bp):
GCCAAATTGATTTTTTAAAGTTCAAGG
Found at i:80905 original size:15 final size:15
Alignment explanation
Indices: 80887--80926 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
80877 TATTTTAAAT
80887 TTAAAATATAAAAAA
1 TTAAAATATAAAAAA
*
80902 TTAAAATAATAAATAA
1 TTAAAAT-ATAAAAAA
80918 -TAAAATATA
1 TTAAAATATA
80927 TATATTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 3 0.13
15 13 0.57
16 7 0.30
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
TTAAAATATAAAAAA
Found at i:81554 original size:23 final size:23
Alignment explanation
Indices: 81516--81560 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
81506 ATAAAAAAAT
81516 AATAATATATATTTTTAGTTTTTG
1 AATAATATATATTTTTA-TTTTTG
*
81540 AATAATTTA-ATTTTTATTTTT
1 AATAATATATATTTTTATTTTT
81561 ATTCATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 5 0.25
23 7 0.35
24 8 0.40
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (23 bp):
AATAATATATATTTTTATTTTTG
Found at i:82515 original size:3 final size:3
Alignment explanation
Indices: 82507--82541 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
82497 TACATTACTC
82507 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
82542 TGTTTACGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:83781 original size:2 final size:2
Alignment explanation
Indices: 83776--83816 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
83766 TTTGTTCTAA
83776 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
83817 GAGAGAGAGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:88814 original size:30 final size:30
Alignment explanation
Indices: 88729--88816 Score: 88
Period size: 30 Copynumber: 2.9 Consensus size: 30
88719 TTATAACTAG
*
88729 TTATTAAAATTTTCAAACTGCTATAAAATAA
1 TTATT-AAATTTTCAAACTGTTATAAAATAA
* ** *
88760 TTATTAATTTTTTTGAATTGTTATAAAAT-A
1 TTATTAA-ATTTTCAAACTGTTATAAAATAA
*
88790 TTATTAAATTTATCAAACTATTATAAA
1 TTATTAAATTT-TCAAACTGTTATAAA
88817 TCATTCTCTT
Statistics
Matches: 45, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
29 3 0.07
30 21 0.47
31 21 0.47
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47
Consensus pattern (30 bp):
TTATTAAATTTTCAAACTGTTATAAAATAA
Found at i:96432 original size:22 final size:21
Alignment explanation
Indices: 96390--96429 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
96380 GAGTTTATTT
*
96390 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
96411 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
96430 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:98461 original size:23 final size:23
Alignment explanation
Indices: 98421--98478 Score: 100
Period size: 22 Copynumber: 2.6 Consensus size: 23
98411 AAACCATTCA
98421 GGGGGAAATCGGTACCCCCTT-G
1 GGGGGAAATCGGTACCCCCTTGG
98443 GGGGGAAATCGGTACCCCCTTGG
1 GGGGGAAATCGGTACCCCCTTGG
*
98466 GGGGGGAATCGGT
1 GGGGGAAATCGGT
98479 TCCCTCTGAG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 21 0.62
23 13 0.38
ACGTcount: A:0.17, C:0.22, G:0.43, T:0.17
Consensus pattern (23 bp):
GGGGGAAATCGGTACCCCCTTGG
Found at i:98833 original size:22 final size:22
Alignment explanation
Indices: 98771--98845 Score: 107
Period size: 22 Copynumber: 3.4 Consensus size: 22
98761 AAAAATTATG
* * *
98771 TAATTAATATTT-TATTTTAAA
1 TAATTTATATTTAAATTTTAAT
98792 TAATTTATATTTAAAATTTTAAT
1 TAATTTATATTT-AAATTTTAAT
98815 TAATTTATATTTAAATTTTAAT
1 TAATTTATATTTAAATTTTAAT
98837 TAATTTATA
1 TAATTTATA
98846 ATTATACGTT
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
21 11 0.22
22 19 0.39
23 19 0.39
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TAATTTATATTTAAATTTTAAT
Found at i:98839 original size:11 final size:12
Alignment explanation
Indices: 98793--98849 Score: 59
Period size: 11 Copynumber: 5.0 Consensus size: 12
98783 TATTTTAAAT
*
98793 AATTTATATTTAA
1 AATTTATAATT-A
98806 AATTT-TAATT-
1 AATTTATAATTA
*
98816 AATTTATATTTA
1 AATTTATAATTA
98828 AATTT-TAATT-
1 AATTTATAATTA
98838 AATTTATAATTA
1 AATTTATAATTA
98850 TACGTTGAGT
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
10 10 0.27
11 13 0.35
12 9 0.24
13 5 0.14
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
AATTTATAATTA
Found at i:98919 original size:26 final size:26
Alignment explanation
Indices: 98890--98941 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
98880 TATAAATTAA
98890 ATTAATGATGCTCAACAATATTCATC
1 ATTAATGATGCTCAACAATATTCATC
* * *
98916 ATTAGTGATTCTCAACTATATTCATC
1 ATTAATGATGCTCAACAATATTCATC
98942 CAACGTGGCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.35, C:0.19, G:0.08, T:0.38
Consensus pattern (26 bp):
ATTAATGATGCTCAACAATATTCATC
Found at i:99471 original size:61 final size:60
Alignment explanation
Indices: 99368--99516 Score: 228
Period size: 61 Copynumber: 2.5 Consensus size: 60
99358 CAAAAACTCG
* *
99368 AAAT-AAAAATTTGAAGTTCGACTCGAAAACTTGTGAGTTTAAAATTTTCAAGGTCGACTAT
1 AAATCAAAAA-TTGAAGTTCGACTTG-AAACTTGTGAGCTTAAAATTTTCAAGGTCGACTAT
*
99429 AAATCAAAAATTGAAGTTCGACTTGAAAGTTGGTGAGCTTAAAATTTTCAAGGTCGACTAT
1 AAATCAAAAATTGAAGTTCGACTTGAAACTT-GTGAGCTTAAAATTTTCAAGGTCGACTAT
*
99490 AAATCAAAAATTGAAGCTCGACTTGAA
1 AAATCAAAAATTGAAGTTCGACTTGAA
99517 CTTAAACCTT
Statistics
Matches: 82, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
60 5 0.06
61 72 0.88
62 5 0.06
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.30
Consensus pattern (60 bp):
AAATCAAAAATTGAAGTTCGACTTGAAACTTGTGAGCTTAAAATTTTCAAGGTCGACTAT
Found at i:99980 original size:2 final size:2
Alignment explanation
Indices: 99973--100029 Score: 93
Period size: 2 Copynumber: 30.0 Consensus size: 2
99963 TAAAGTATTA
99973 AT AT AT AT AT AT AT -T AT AT AT AT AT -T AT A- AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
100012 AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT
100030 TGAATAGGTG
Statistics
Matches: 52, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
1 3 0.06
2 49 0.94
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:100810 original size:35 final size:36
Alignment explanation
Indices: 100763--100859 Score: 126
Period size: 36 Copynumber: 2.7 Consensus size: 36
100753 CAACACATTA
* *
100763 TCAATTACATTCTAAAGCC-CAAATTTC-AAAATACT
1 TCAATTATATTCTAAA-CCTCAAATTCCAAAAATACT
100798 TCAATTATATTCTAAACCTCAAATTCCAAAAATACT
1 TCAATTATATTCTAAACCTCAAATTCCAAAAATACT
* **
100834 TCAATTATATACCCAACCTCAAATTC
1 TCAATTATATTCTAAACCTCAAATTC
100860 ATAATCCATT
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
34 2 0.04
35 22 0.40
36 31 0.56
ACGTcount: A:0.42, C:0.25, G:0.01, T:0.32
Consensus pattern (36 bp):
TCAATTATATTCTAAACCTCAAATTCCAAAAATACT
Found at i:101838 original size:35 final size:35
Alignment explanation
Indices: 101799--101878 Score: 117
Period size: 35 Copynumber: 2.3 Consensus size: 35
101789 GGGGTTGGGC
*
101799 ATGTAATTGAAGTATTTTGGAATTTGA-GGTTTAAA
1 ATGTAATTGAAATATTTTGG-ATTTGAGGGTTTAAA
* *
101834 ATGTAATTGAAATATTTTGGATTTTAGGGTTTAGA
1 ATGTAATTGAAATATTTTGGATTTGAGGGTTTAAA
101869 ATGTAATTGA
1 ATGTAATTGA
101879 TGACTATGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
34 5 0.12
35 36 0.88
ACGTcount: A:0.34, C:0.00, G:0.23, T:0.44
Consensus pattern (35 bp):
ATGTAATTGAAATATTTTGGATTTGAGGGTTTAAA
Done.