genome.fa.s5563.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005563.1 Hibiscus syriacus cultivar Beakdansim tig00012903_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93473

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355--420	21	3.2	21	68	8	55	18	21	36	24	1.95
393--476	42	2.0	42	85	0	114	22	16	39	21	1.92
2479--2577	33	3.0	33	89	1	144	39	26	23	11	1.88
2454--2619	20	9.1	19	74	16	136	43	22	22	12	1.86
2615--2681	19	3.5	19	85	2	89	10	16	25	47	1.78
3260--3334	21	3.6	21	89	3	107	14	25	20	40	1.90
3198--3292	41	2.3	41	80	3	102	21	20	23	35	1.96
3279--3351	19	3.7	20	88	3	94	16	23	20	39	1.92
3797--3862	24	2.8	23	77	20	66	51	4	1	42	1.31
5701--5736	3	11.3	3	88	11	54	63	0	33	2	1.08
6972--7014	18	2.4	17	84	7	50	60	0	4	34	1.17
8940--8984	3	15.0	3	100	0	90	66	0	0	33	0.92
10333--10411	20	4.0	20	75	1	70	29	21	13	35	1.92
10311--10406	40	2.4	40	85	3	131	27	21	14	36	1.93
10213--10440	40	5.7	40	73	12	121	32	23	13	31	1.93
10351--10444	20	4.7	20	73	5	64	29	22	12	35	1.91
12449--12625	93	1.9	92	92	1	300	32	9	25	33	1.87
12822--13029	42	5.0	42	87	4	280	25	37	13	24	1.91
13129--13176	21	2.3	21	85	0	60	27	10	33	29	1.90
13141--13319	21	8.5	21	73	8	150	22	12	31	33	1.91
13141--13319	42	4.3	42	85	2	236	22	12	31	33	1.91
13644--13768	21	6.0	21	70	15	80	21	36	13	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13690--13776	21	4.1	21	82	7	97	24	41	11	22	1.87
16982--17079	20	5.2	20	65	18	66	46	20	11	21	1.81
17079--17156	20	3.9	20	78	5	86	29	12	23	34	1.92
18116--18149	12	2.8	12	90	0	50	20	2	26	50	1.63
20461--20514	24	2.2	24	93	0	90	40	20	18	20	1.91
20477--20528	24	2.2	24	85	0	68	38	21	17	23	1.93
31178--31249	23	3.1	23	78	11	76	44	1	2	51	1.24
31218--31265	21	2.2	22	85	3	62	47	0	2	50	1.12
31217--31298	30	2.7	30	78	12	80	47	0	1	51	1.08
31263--31307	24	1.9	23	86	4	63	42	0	2	55	1.12
31539--31574	14	2.6	14	81	0	54	52	11	5	30	1.59
44124--44159	3	12.0	3	100	0	72	66	0	0	33	0.92
46230--46291	29	2.1	29	100	0	124	27	6	16	50	1.69
46971--47034	21	3.1	21	72	4	67	18	18	25	37	1.94
47005--47113	41	2.6	41	84	4	139	19	19	20	41	1.91
47085--47132	19	2.5	19	100	0	96	18	20	18	41	1.90
47867--47959	41	2.3	41	92	0	150	40	22	15	21	1.90
47889--47960	22	3.4	22	67	18	62	40	23	15	20	1.91
47952--48004	20	2.7	20	96	0	97	43	20	24	11	1.85
47980--48034	28	2.0	28	85	7	76	34	16	27	21	1.95
49880--50085	75	2.7	76	87	3	292	20	24	32	23	1.98
52666--52750	21	4.0	21	77	8	82	17	24	35	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56555--56594	21	1.9	21	85	10	55	35	10	2	52	1.48
58517--58720	74	2.7	74	86	3	277	20	24	31	24	1.98
79755--79803	25	2.0	25	87	0	71	30	16	12	40	1.85
88682--88752	24	2.9	25	74	16	69	52	1	1	45	1.18
89046--89162	59	2.0	60	82	1	146	53	0	1	43	1.16
89351--89393	12	3.5	13	84	9	54	46	0	0	53	1.00
90506--90549	20	2.3	19	88	4	61	22	2	4	70	1.17
90640--90730	2	45.5	2	100	0	182	49	0	0	50	1.00
90749--90857	13	8.2	13	69	19	57	19	9	2	68	1.29

Tables:   1

The End!