Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005564.1 Hibiscus syriacus cultivar Beakdansim tig00012905_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74249

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10411--10480
17
3.5
22
61
25
55
54
4
1
40
1.29
10404--10474
37
2.0
36
88
5
108
49
4
1
45
1.30
15494--15543
20
2.5
20
96
0
91
48
14
16
22
1.81
15955--15984
2
15.0
2
100
0
60
50
0
50
0
1.00
17512--17546
16
2.2
16
89
0
52
28
2
2
65
1.21
28060--28634
43
13.5
42
69
12
280
49
6
18
25
1.72
28072--28634
87
6.6
87
70
14
255
49
6
18
25
1.72
28279--28634
43
8.5
42
73
12
286
50
5
17
26
1.68
33170--33197
2
14.0
2
100
0
56
50
0
0
50
1.00
37126--37155
14
2.1
14
100
0
60
20
0
6
73
1.05
41331--41357
4
6.8
4
100
0
54
25
0
0
74
0.83
42423--42456
18
1.9
17
94
5
59
29
0
23
47
1.52
45281--45332
24
2.2
23
90
10
79
11
9
17
61
1.55
45322--45383
14
4.9
12
73
23
56
11
11
17
59
1.60
45281--45383
37
2.8
37
83
4
118
11
10
17
60
1.59
45282--45383
51
2.0
50
86
1
141
11
10
17
59
1.59
52539--52592
19
2.8
20
85
2
74
37
31
11
20
1.88
52623--52730
40
2.7
40
81
2
110
29
24
12
34
1.91
52663--52730
20
3.4
20
80
8
84
29
23
13
33
1.93
52887--52924
16
2.5
15
84
12
51
28
5
0
65
1.14
53519--53552
12
2.8
12
90
0
50
55
29
0
14
1.40
53678--53731
24
2.2
24
93
0
90
20
18
20
40
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57816--57949
21
6.4
21
80
1
117
26
19
33
20
1.97
58363--58412
21
2.4
21
86
0
73
34
30
14
22
1.93
59959--59992
14
2.4
14
90
0
50
11
17
23
47
1.81
59973--60011
20
2.0
20
100
0
78
15
12
20
51
1.76
59975--60018
20
2.2
20
91
0
70
15
13
20
50
1.78
60228--60270
22
1.9
23
85
4
61
72
2
0
25
0.97
60558--60605
19
2.5
20
82
3
62
20
10
22
45
1.81
67373--67432
31
1.9
32
89
3
95
46
0
18
35
1.49

Tables:   1

The End!