Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005566.1 Hibiscus syriacus cultivar Beakdansim tig00012908_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61640

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
98--160
32
2.0
32
87
0
90
33
9
19
38
1.84
112--189
32
2.4
32
82
4
86
32
7
21
38
1.82
2086--2144
22
2.7
21
75
17
57
66
1
6
25
1.26
2176--2224
21
2.3
20
89
6
71
67
4
0
28
1.09
10222--10265
3
15.3
3
90
9
74
31
0
0
68
0.90
19402--20047
258
2.5
257
87
1
927
35
16
15
33
1.90
21398--21468
21
3.5
21
72
18
69
26
16
21
35
1.95
24362--24427
20
3.2
20
77
8
69
48
4
7
39
1.52
24362--24427
22
3.1
21
73
8
62
48
4
7
39
1.52
24340--24452
42
2.7
42
80
6
147
47
4
6
41
1.48
24407--24721
30
10.4
30
65
19
86
46
3
5
44
1.44
24438--24477
20
2.1
19
90
4
62
57
5
2
35
1.34
24429--24483
15
3.3
15
75
22
56
50
5
1
41
1.36
24466--24512
22
2.1
22
88
0
67
44
2
4
48
1.34
24584--24650
26
2.5
27
85
4
91
47
1
2
47
1.26
24541--24648
20
5.5
19
69
16
69
47
2
3
46
1.35
24778--24959
22
8.3
22
73
15
90
46
8
6
39
1.58
24851--24892
20
2.1
20
100
0
84
40
9
9
40
1.70
24889--24942
18
2.8
20
77
11
58
48
9
1
40
1.46
24891--24923
9
3.7
9
95
0
57
51
9
0
39
1.34
24875--25131
137
1.9
135
85
5
353
43
7
4
43
1.54
25017--25156
2
67.0
2
68
23
67
44
5
3
47
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25014--25073
13
4.5
14
75
8
63
46
6
3
43
1.46
25015--25156
20
7.3
20
71
15
93
44
5
3
46
1.44
25015--25100
40
2.2
39
89
8
129
43
6
3
46
1.47
25045--25127
27
3.2
26
86
3
96
40
6
4
48
1.49
25050--25188
27
5.2
27
74
15
94
43
5
5
46
1.49
25330--25386
18
3.4
16
79
11
53
50
3
5
40
1.42
25332--25438
33
3.2
34
83
11
116
44
6
6
42
1.56
25347--25482
51
2.7
51
78
6
168
42
7
8
41
1.62
25427--25536
33
3.3
32
72
14
105
43
7
6
42
1.57
25446--25507
18
3.5
18
84
10
83
50
4
6
38
1.50
25449--25507
17
3.5
15
82
17
64
50
5
5
38
1.46
25710--25863
33
5.0
33
76
12
123
44
5
7
42
1.56
25758--25835
18
4.2
18
79
12
79
52
3
2
41
1.33
25758--25819
2
30.0
2
79
12
63
51
3
3
41
1.34
25923--26057
59
2.2
61
88
3
202
47
8
8
35
1.65
26707--26807
6
16.7
6
70
10
62
49
38
3
7
1.51
26725--26811
24
3.6
24
78
10
88
50
36
4
8
1.52
29500--29568
31
2.2
31
89
0
102
20
15
10
53
1.71
31758--31800
13
3.2
13
76
3
50
27
25
16
30
1.97
34549--34664
53
2.2
53
81
3
126
21
32
4
41
1.73
37411--37455
17
2.6
17
96
0
81
4
8
35
51
1.54
44469--44494
2
13.0
2
100
0
52
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46508--46557
25
2.0
25
100
0
100
32
4
12
52
1.57
53555--53607
24
2.2
25
82
3
63
18
7
3
69
1.28
58175--58224
13
3.8
13
81
0
55
28
20
18
34
1.95

Tables:   1

The End!