genome.fa.s5568.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005568.1 Hibiscus syriacus cultivar Beakdansim tig00012915_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  154668

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
386--425	19	2.2	19	95	4	73	50	35	15	0	1.44
990--1031	20	2.2	18	91	8	66	30	0	2	66	1.04
1060--1124	22	3.0	20	80	14	60	26	6	1	66	1.24
1062--1107	21	2.2	21	81	14	51	28	4	2	65	1.23
2784--3070	142	2.0	142	100	0	574	29	21	6	41	1.80
3049--3211	32	5.0	32	71	13	109	34	19	11	34	1.88
6560--6595	17	2.1	17	94	0	63	80	5	13	0	0.88
6792--6833	15	2.6	16	85	7	50	11	21	0	66	1.23
11160--11199	8	5.0	8	87	0	62	47	15	22	15	1.82
18576--18613	19	2.0	19	89	0	58	23	23	28	23	1.99
22038--22085	20	2.4	20	96	0	87	27	12	37	22	1.90
27807--28999	600	2.0	590	96	1	2206	35	21	15	28	1.93
33301--33633	168	2.0	167	92	2	553	25	17	18	38	1.92
41341--41378	16	2.4	16	95	0	67	47	0	10	42	1.38
41357--42059	233	3.1	226	82	7	812	33	15	16	34	1.90
41884--41965	42	2.0	42	85	2	112	25	19	19	35	1.95
41667--42059	213	1.8	213	86	2	574	34	14	16	33	1.90
45895--45932	17	2.1	18	85	9	51	0	28	18	52	1.45
46422--46531	3	36.7	3	92	0	184	62	0	2	34	1.09
46847--47594	113	6.6	113	93	1	1261	29	18	14	38	1.89
48273--48651	83	4.6	84	96	1	694	37	22	12	26	1.90
48608--48852	50	4.9	50	93	2	409	38	22	14	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49625--49669	18	2.6	17	89	6	65	55	6	6	31	1.52
49998--50035	17	2.1	19	85	9	53	2	10	0	86	0.66
61414--61448	12	2.9	12	91	8	54	57	0	0	42	0.99
62373--62410	17	2.1	18	85	9	51	0	28	18	52	1.45
62892--63013	3	40.7	3	91	0	199	63	0	3	33	1.11
66777--67179	146	2.8	143	79	9	440	46	7	6	39	1.58
67270--67320	22	2.3	22	96	0	93	54	7	7	29	1.57
69012--69348	123	2.7	124	87	3	457	26	18	14	40	1.89
69259--69593	112	3.0	113	93	1	584	25	20	17	37	1.93
73734--73763	16	1.9	15	93	6	51	3	13	0	83	0.77
76373--76412	21	1.9	21	94	0	71	55	12	17	15	1.70
76372--76412	6	6.0	7	83	16	59	56	12	17	14	1.68
77336--77384	22	2.2	22	82	7	64	32	28	28	10	1.90
77963--78118	31	5.0	31	93	1	251	21	18	22	37	1.94
81341--81385	21	2.1	21	83	0	54	31	31	24	13	1.93
81410--81451	22	2.0	22	85	4	59	28	33	28	9	1.88
82038--82211	31	5.6	31	92	0	285	20	19	21	39	1.93
85447--85491	21	2.1	21	83	0	54	31	31	24	13	1.93
85516--85557	22	2.0	22	85	4	59	28	33	28	9	1.88
86144--86317	31	5.6	31	92	0	285	20	19	21	39	1.93
87467--87538	36	2.0	36	94	0	126	26	11	22	40	1.87
89239--89284	24	1.9	23	82	8	56	43	0	2	54	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89441--89491	22	2.3	22	96	0	93	54	7	7	29	1.57
89599--89748	75	2.0	75	98	0	291	44	4	9	42	1.57
92230--92256	2	13.5	2	100	0	54	51	0	0	48	1.00
93578--93692	60	1.9	60	87	0	167	39	20	12	27	1.88
98112--98277	78	2.1	78	86	6	230	36	7	8	47	1.62
100247--101086	420	2.0	418	98	1	1621	25	20	18	35	1.96
108724--108771	23	2.0	24	92	4	80	56	20	6	16	1.62
109089--109119	16	1.9	16	93	0	53	32	0	35	32	1.58
109059--109094	2	19.0	2	88	11	58	52	0	0	47	1.00
114529--114720	106	1.8	103	82	6	244	17	18	24	39	1.92
119124--119201	2	38.5	2	88	10	106	47	0	3	48	1.20
120645--120932	5	58.0	5	96	3	530	40	0	0	59	0.97
125455--125556	45	2.3	45	85	0	141	24	21	6	47	1.75
125412--125569	45	3.5	45	76	6	115	27	20	7	44	1.78
125649--125889	81	3.0	80	79	4	270	29	23	11	34	1.90
125845--126366	68	7.7	68	86	0	668	31	22	14	30	1.94
126741--126968	117	1.9	117	86	6	320	32	20	14	33	1.92
126742--126972	58	3.9	58	85	6	281	32	20	13	34	1.91
127982--128012	3	10.3	3	100	0	62	64	0	35	0	0.94
128176--128227	24	2.2	24	89	0	77	36	15	0	48	1.45
128182--128236	24	2.3	24	96	0	101	32	14	0	52	1.42
130533--130634	45	2.3	45	82	3	134	25	19	5	49	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130533--130647	45	2.6	45	81	2	133	26	20	5	46	1.72
130761--131236	68	7.0	68	85	1	560	29	22	15	31	1.95
130761--131236	136	3.5	135	87	1	630	29	22	15	31	1.95
131608--131844	59	4.0	59	88	2	327	32	19	13	35	1.91
135299--135337	20	2.0	20	89	0	60	33	23	10	33	1.88
144068--144124	21	2.7	21	86	5	80	24	17	28	29	1.97
144110--144162	23	2.3	23	93	0	88	18	22	28	30	1.98
153246--153398	31	5.0	31	88	5	233	18	18	22	39	1.92
153246--153398	61	2.5	60	89	7	238	18	18	22	39	1.92

Tables:   1

The End!