Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005569.1 Hibiscus syriacus cultivar Beakdansim tig00012917_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79868

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1987--2067
34
2.4
34
93
0
135
18
12
27
41
1.86
2908--2937
2
15.0
2
92
0
51
53
0
0
46
1.00
6193--6265
21
3.5
21
94
0
128
52
2
35
9
1.49
6193--6283
42
2.2
42
88
4
130
50
2
38
8
1.46
9570--9608
3
12.0
3
86
10
51
5
30
0
64
1.15
9570--9607
13
2.8
13
96
4
67
5
31
0
63
1.17
10956--11012
22
2.6
22
88
0
78
21
40
17
21
1.92
11359--11409
20
2.5
20
90
0
75
58
21
7
11
1.58
13263--13304
21
2.0
21
85
0
57
23
19
26
30
1.98
13586--13702
42
2.8
42
85
2
146
21
35
20
23
1.96
13587--13702
21
5.6
20
79
8
108
21
35
20
22
1.96
15611--15654
19
2.2
21
88
8
65
29
20
4
45
1.71
17694--17851
64
2.5
64
92
1
271
30
1
16
51
1.55
17914--17990
34
2.3
34
81
0
91
20
19
22
37
1.94
18045--18083
20
2.0
20
89
0
60
17
20
28
33
1.96
20714--20747
12
2.8
12
90
0
50
14
0
29
55
1.40
21343--21382
16
2.5
16
83
0
53
67
0
5
27
1.11
21537--21629
19
4.7
20
83
10
93
30
9
24
35
1.88
21538--21629
39
2.3
41
85
5
118
30
9
25
34
1.88
23642--23680
6
6.5
6
100
0
78
33
51
15
0
1.44
35759--35788
5
6.2
5
92
7
53
20
0
0
80
0.72
35759--35807
19
2.5
19
83
12
55
18
4
4
73
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36487--36542
14
4.3
14
73
17
57
58
14
10
16
1.62
37566--37613
3
16.0
3
100
0
96
33
0
0
66
0.92
40370--40421
9
6.1
9
76
13
56
32
1
1
63
1.16
40369--40418
17
3.0
17
91
2
75
34
2
4
60
1.27
40378--40423
16
2.9
16
87
6
58
30
2
2
65
1.16
41546--41577
2
16.0
2
100
0
64
50
0
0
50
1.00
43267--43313
13
3.5
13
80
11
51
10
25
48
14
1.76
49654--49693
18
2.2
18
100
0
80
42
17
10
30
1.82
53934--54037
45
2.3
45
85
6
131
35
18
22
24
1.95
54045--54102
20
2.6
22
86
10
75
31
18
22
27
1.97
55853--55923
16
4.4
16
90
0
115
19
25
14
40
1.89
56196--56242
14
3.7
14
71
26
50
44
0
4
51
1.21
56195--56245
23
2.2
24
96
3
95
47
0
3
49
1.20
56521--56564
2
21.0
2
81
9
52
45
4
2
47
1.35
56531--56584
20
2.6
21
85
5
74
40
9
5
44
1.60
56828--56872
20
2.2
20
100
0
90
28
15
17
37
1.91
56828--56880
20
2.7
20
93
0
79
30
15
16
37
1.90
56956--57023
7
9.7
7
79
6
66
17
1
29
51
1.54
57729--57771
22
2.0
22
86
9
61
18
32
9
39
1.83
57045--57935
470
1.9
470
92
0
1489
35
16
13
34
1.88
57944--58023
23
3.6
23
73
10
58
61
17
11
10
1.56
57979--58034
23
2.3
23
87
6
76
64
17
8
8
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58269--58330
24
2.6
24
84
5
81
61
17
9
11
1.56
66760--66801
21
2.0
21
85
4
57
26
26
0
47
1.52
69102--69272
88
1.9
88
97
0
324
41
20
12
25
1.88
72652--72690
20
1.9
20
84
5
51
74
2
0
23
0.94
72817--72882
28
2.3
27
73
19
62
50
1
3
45
1.26

Tables:   1

The End!