genome.fa.s5571.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005571.1 Hibiscus syriacus cultivar Beakdansim tig00012922_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68911

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1245--1283	19	2.1	19	85	9	53	41	2	0	56	1.13
1859--1974	63	1.9	60	81	16	141	51	5	6	36	1.51
3690--3784	24	4.0	24	81	0	100	50	17	9	22	1.75
3743--3798	24	2.3	24	87	0	85	58	12	5	23	1.54
4132--4184	27	2.0	27	96	0	97	35	20	11	32	1.88
13281--13329	24	2.0	24	100	0	98	65	6	24	4	1.33
13456--13485	14	2.1	15	93	6	53	76	3	13	6	1.11
16877--17128	29	8.6	29	86	6	269	30	4	17	47	1.68
16882--17128	115	2.1	117	85	5	322	31	4	16	47	1.68
16924--17159	29	8.2	28	84	8	157	32	5	16	45	1.69
23607--23711	21	5.1	21	85	6	137	60	9	5	24	1.50
24230--24504	29	9.4	29	86	6	297	30	4	16	47	1.67
27538--27565	3	9.3	3	100	0	56	67	0	0	32	0.91
31232--31284	21	2.5	21	78	6	63	22	26	16	33	1.96
31277--31326	21	2.4	21	93	0	82	40	18	22	20	1.92
31315--31409	20	4.7	20	82	7	111	34	27	17	20	1.95
31596--31639	22	2.0	22	90	0	70	20	43	15	20	1.88
33280--33327	18	2.7	18	93	0	87	27	45	12	14	1.81
34073--34141	21	3.3	21	70	9	61	24	39	15	20	1.92
34063--34153	42	2.2	42	88	2	139	21	40	15	21	1.90
35563--35601	14	2.8	14	84	0	51	35	0	17	46	1.49
35737--35786	14	3.0	17	75	24	61	48	18	22	12	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35728--35781	14	3.5	14	75	22	54	48	18	20	12	1.81
36074--36179	20	5.3	20	93	2	151	27	19	26	26	1.99
36169--36220	20	2.5	21	87	3	70	21	23	17	38	1.93
36417--36450	12	2.9	12	86	4	52	17	41	5	35	1.74
37234--37258	12	2.1	12	100	0	50	72	0	28	0	0.86
39568--39659	19	5.4	19	68	24	87	46	17	20	15	1.84
39568--39694	33	3.8	33	92	0	200	46	18	22	13	1.83
39568--39698	19	7.7	18	64	25	70	46	18	22	12	1.83
39694--39770	19	4.3	19	78	18	85	12	16	24	45	1.83
39709--39835	33	3.8	33	93	2	202	12	20	21	45	1.84
39704--39835	19	7.7	18	71	23	92	12	20	21	46	1.83
39942--39978	14	2.6	14	91	0	65	51	18	0	29	1.47
41328--41421	42	2.2	42	81	7	102	22	21	34	22	1.97
41367--41446	42	1.9	42	82	5	99	25	17	36	21	1.95
41668--41852	91	2.0	90	90	8	293	47	18	11	21	1.81
43499--43653	14	8.8	19	67	22	88	43	20	23	12	1.86
43527--43644	33	3.5	33	98	1	227	39	23	24	11	1.88
44238--44349	20	5.6	20	81	4	127	22	20	19	37	1.94
44256--44349	41	2.3	40	87	1	125	21	21	18	39	1.93
44345--44411	21	3.2	21	74	4	64	40	14	20	23	1.90
44421--44472	20	2.5	21	87	3	70	21	23	17	38	1.93
44317--44487	41	4.2	40	68	10	112	30	18	20	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44462--44514	21	2.5	22	81	6	74	33	18	26	20	1.96
44549--44594	19	2.3	20	81	7	58	26	17	28	28	1.98
48438--48505	29	2.3	30	90	7	113	52	0	7	39	1.29
51208--51237	16	1.9	16	93	6	53	63	0	0	36	0.95

Tables:   1

The End!