genome.fa.s5572.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005572.1 Hibiscus syriacus cultivar Beakdansim tig00012930_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131483

Tables:   1   

This is table  1  of  1  ( 106 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
790--823	17	2.1	16	88	5	50	14	8	0	76	1.01
2236--2282	23	2.0	23	100	0	94	34	21	14	29	1.93
2666--2719	17	2.9	19	75	25	53	81	9	9	0	0.88
2669--2740	18	4.1	17	76	13	65	80	9	8	1	0.96
4247--4351	21	5.4	20	68	21	71	23	22	13	40	1.90
4217--4371	36	4.2	36	80	10	177	27	21	14	37	1.92
4250--4310	19	3.1	19	72	13	61	26	19	11	42	1.85
4212--4359	76	1.9	77	89	4	228	25	20	14	39	1.90
4216--4379	76	2.1	76	82	7	199	28	21	13	37	1.91
4787--4995	104	2.0	104	90	4	332	34	24	18	21	1.96
5740--5811	35	2.1	35	94	0	126	40	11	20	27	1.87
6452--6478	2	13.5	2	100	0	54	48	0	0	51	1.00
6694--6742	21	2.5	20	78	18	57	6	12	2	79	0.99
6694--6741	20	2.4	19	76	10	51	6	12	2	79	1.01
8632--8964	111	3.0	111	96	0	612	45	11	7	36	1.69
9090--9130	10	4.1	10	84	12	57	39	0	29	31	1.57
9252--9377	50	2.5	50	77	0	135	22	26	35	15	1.94
17020--17243	71	3.1	71	88	5	315	31	5	24	38	1.79
17911--18046	72	1.9	71	82	7	170	49	9	11	30	1.70
18222--18452	20	11.7	19	74	16	141	41	22	13	21	1.88
18243--18392	60	2.5	60	90	1	221	45	22	14	18	1.85
18222--18393	40	4.3	40	78	5	179	44	23	14	18	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18425--18471	18	2.6	18	82	3	58	31	23	12	31	1.92
19240--19273	12	2.8	12	95	0	59	58	26	0	14	1.36
19403--19476	24	3.1	24	94	0	130	21	20	20	37	1.94
21724--21759	18	2.0	18	100	0	72	55	27	0	16	1.42
22133--22178	20	2.3	20	96	0	83	17	15	23	43	1.87
22232--22407	66	2.6	65	89	8	257	52	17	2	27	1.56
23752--23850	21	4.7	21	75	8	94	22	18	35	24	1.96
23756--23850	42	2.3	42	81	7	120	23	15	36	24	1.94
25979--26038	20	3.0	20	92	7	97	50	23	16	10	1.75
26589--26640	20	2.6	20	93	0	86	15	7	25	51	1.69
27115--27156	20	2.2	19	86	4	57	64	2	0	33	1.07
28805--29550	113	6.3	121	85	6	741	26	19	14	39	1.91
29988--30064	22	3.5	22	85	3	102	36	14	15	33	1.88
30424--30589	54	3.1	54	92	0	269	22	24	15	37	1.93
38663--38716	14	3.8	14	85	2	63	51	9	14	24	1.71
42271--42338	20	3.3	20	89	4	109	14	10	27	47	1.77
42332--42378	20	2.3	20	96	0	85	21	19	25	34	1.96
42368--42525	21	7.8	21	75	4	65	29	15	25	29	1.96
42475--42525	19	2.6	19	87	3	66	19	15	31	33	1.93
42878--43169	99	2.9	98	86	4	388	42	11	13	32	1.80
44133--44520	195	2.0	190	95	3	706	35	14	8	41	1.77
45633--45699	2	34.5	2	88	5	102	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45637--45718	6	14.2	6	83	10	64	41	0	0	58	0.98
46042--46076	4	8.8	4	100	0	70	25	0	0	74	0.82
54444--54739	80	3.7	80	93	0	486	31	26	20	21	1.98
56371--56404	18	1.9	18	88	5	52	29	20	0	50	1.49
62096--62170	25	3.0	25	100	0	150	28	16	28	28	1.97
66727--67176	230	2.0	227	94	1	792	45	8	7	39	1.61
67242--67287	20	2.3	19	89	10	74	54	10	17	17	1.70
67409--67455	20	2.4	19	82	10	67	53	10	17	19	1.72
67418--67460	20	2.3	19	88	11	63	51	11	16	20	1.75
69688--69752	21	3.1	21	80	6	69	40	15	29	15	1.88
69786--69851	33	2.0	33	90	0	105	28	0	48	22	1.51
71643--71687	19	2.4	19	88	7	65	28	4	11	55	1.54
71812--73089	198	6.5	197	97	1	2407	35	14	16	32	1.90
71812--73089	395	3.2	396	97	0	2438	35	14	16	32	1.90
72930--72971	21	2.0	21	86	9	59	42	19	14	23	1.87
74547--74608	18	3.4	18	79	0	79	37	9	35	17	1.83
74547--74632	6	14.3	6	77	0	64	37	8	34	19	1.82
74562--74636	3	25.0	3	73	0	60	36	6	34	22	1.81
74550--74628	36	2.2	36	90	0	122	35	8	35	20	1.84
74550--74632	12	6.9	12	83	0	94	36	8	34	20	1.83
76105--76581	183	2.6	183	96	0	882	35	13	16	34	1.88
76798--76834	18	2.1	18	89	0	56	32	5	10	51	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76790--76836	24	2.0	24	86	0	67	34	4	14	46	1.64
77090--77176	39	2.2	39	87	0	138	47	19	13	19	1.83
77597--77669	23	3.2	23	88	0	101	34	4	21	39	1.73
78028--78100	23	3.2	23	88	0	101	34	4	21	39	1.73
77386--78439	431	2.5	429	97	1	1981	41	7	12	38	1.72
78513--78560	23	2.1	23	88	0	69	35	16	10	37	1.83
79324--79357	18	1.9	18	88	5	52	26	29	26	17	1.98
79366--79390	11	2.3	11	100	0	50	68	8	16	8	1.38
80064--80108	22	2.0	22	87	8	65	28	0	4	66	1.11
82315--82340	2	13.0	2	100	0	52	50	0	50	0	1.00
84534--84569	2	18.0	2	100	0	72	50	0	0	50	1.00
91280--91332	21	2.5	21	87	0	79	20	24	18	35	1.95
91322--91434	20	5.6	20	84	2	154	38	20	22	19	1.94
91422--91469	20	2.3	21	89	3	71	33	27	18	20	1.96
92313--92366	24	2.2	24	93	0	90	20	18	20	40	1.91
94775--94868	20	4.7	20	89	2	145	32	25	23	18	1.97
94851--94935	33	2.5	33	84	1	107	45	16	22	15	1.84
94950--95045	33	2.9	34	87	3	131	14	23	19	41	1.89
95151--95187	14	2.6	14	86	0	56	48	21	0	29	1.50
96550--96657	21	5.1	21	76	4	101	25	18	34	21	1.96
96565--96657	42	2.2	42	82	0	114	25	16	36	21	1.94
97126--97194	20	3.5	20	93	0	120	43	26	15	14	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97233--97284	20	2.6	20	90	0	77	34	23	21	21	1.97
97250--97305	20	2.8	20	86	2	69	25	21	17	35	1.95
97312--97488	20	9.5	20	79	16	184	18	18	21	41	1.90
97332--97465	33	3.8	34	81	7	144	15	18	21	44	1.87
99373--99436	20	3.2	20	88	0	83	43	23	17	15	1.87
99410--99482	33	2.2	34	82	7	87	39	24	20	15	1.91
99807--99872	22	3.0	22	84	0	78	21	16	37	24	1.93
100070--100267	20	9.9	20	92	1	315	21	20	19	39	1.93
100276--100321	21	2.2	21	88	0	65	36	17	28	17	1.92
110579--110615	18	2.0	20	85	15	53	10	10	2	75	1.14
116305--116456	60	2.5	60	76	16	145	32	20	4	42	1.73
123005--123092	24	3.5	24	70	8	77	57	18	13	10	1.63
122991--123092	14	6.9	14	74	18	73	57	17	13	10	1.64
123047--123087	13	3.1	13	86	6	64	63	21	7	7	1.45
123278--123325	14	3.6	14	72	11	55	52	18	14	14	1.75
124480--124687	87	2.4	86	80	2	229	33	21	15	29	1.94
128518--128554	18	2.1	17	95	5	65	0	40	18	40	1.51
128776--128860	41	2.0	43	80	13	97	61	0	0	38	0.96

Tables:   1

The End!