genome.fa.s5573.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005573.1 Hibiscus syriacus cultivar Beakdansim tig00012931_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151023

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1583--1646	28	2.3	28	81	5	67	48	3	4	43	1.39
1718--1748	14	2.2	14	94	0	53	67	0	9	22	1.19
8606--8895	144	2.0	144	99	0	571	25	24	17	32	1.97
9878--9918	8	5.2	8	82	5	57	34	0	29	36	1.58
9989--10488	128	3.9	128	96	0	896	23	23	19	33	1.97
11094--11194	34	3.0	34	85	0	139	38	4	3	52	1.42
11716--11785	21	3.3	20	86	5	86	20	27	34	18	1.96
11789--11836	21	2.3	21	85	0	60	22	12	39	25	1.89
13556--13644	34	2.7	31	79	6	88	58	2	0	39	1.11
13556--13635	34	2.4	33	81	8	92	60	1	0	38	1.05
15958--15984	5	5.4	5	100	0	54	40	0	22	37	1.54
19228--19260	2	16.5	2	93	0	57	48	0	3	48	1.17
20932--20973	21	2.0	20	86	4	57	38	14	7	40	1.73
23505--23549	23	2.0	23	90	0	72	24	26	26	22	2.00
23517--23830	149	2.1	148	96	1	576	34	21	16	27	1.95
25386--25430	21	2.1	21	87	0	63	15	24	28	31	1.96
28675--28719	23	2.0	23	90	0	72	24	26	26	22	2.00
28687--29001	149	2.1	149	97	1	587	34	21	16	27	1.95
34082--34120	20	1.9	21	94	5	71	41	15	7	35	1.76
34703--34782	29	2.8	29	80	0	97	41	5	3	50	1.42
40645--40675	2	15.5	2	100	0	62	51	0	0	48	1.00
43240--43289	16	3.2	16	80	5	66	30	4	20	46	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43240--43297	31	2.0	29	83	12	75	29	3	22	44	1.69
48789--49264	239	2.0	236	96	2	884	34	24	15	25	1.94
52598--52644	23	2.0	23	87	0	67	25	27	23	23	2.00
52623--52927	149	2.0	149	98	0	583	34	21	16	27	1.95
53528--53561	2	17.5	2	87	6	52	50	2	0	47	1.16
54000--54044	21	2.1	21	87	0	63	15	24	28	31	1.96
56280--56317	20	1.9	20	100	0	76	21	13	15	50	1.78
58185--58210	7	3.7	7	100	0	52	88	11	0	0	0.52
61395--61433	19	2.1	19	85	9	53	35	0	5	58	1.20
61731--61756	13	2.0	13	100	0	52	61	0	7	30	1.24
65233--65325	48	2.0	48	87	6	136	27	21	4	46	1.70
66991--67532	4	135.0	4	97	0	922	25	2	24	47	1.66
71359--71507	60	2.4	61	92	2	237	37	12	12	37	1.81
72085--72140	27	2.2	25	82	17	64	32	16	14	37	1.88
81513--81592	40	2.0	40	95	0	142	36	18	8	36	1.82
89606--89638	16	2.0	17	88	5	50	45	6	0	48	1.27
90759--90945	31	6.0	31	95	1	322	37	22	18	20	1.94
92529--93011	171	2.8	171	92	0	761	32	13	20	32	1.92
93919--93953	17	2.1	17	89	10	54	62	8	11	17	1.52
94572--94601	13	2.3	13	94	0	51	46	16	0	36	1.47
110999--111044	24	1.9	24	95	0	83	45	32	6	15	1.71
111580--111654	35	2.1	35	82	4	89	53	9	5	32	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113562--113717	31	5.0	31	92	1	242	38	23	17	19	1.93
114247--114304	20	2.7	22	76	15	68	37	13	5	43	1.67
114731--114775	21	2.1	21	84	8	56	17	24	26	31	1.97
118093--118248	31	5.0	31	95	1	260	37	23	19	19	1.94
118782--118824	20	2.1	21	87	8	63	32	11	6	48	1.66
118788--118834	20	2.2	20	85	7	58	36	12	6	44	1.68
119264--119304	21	2.0	21	85	0	55	17	24	29	29	1.97
121771--121952	100	1.8	100	85	2	258	31	15	25	27	1.96
121939--121996	22	2.7	21	82	12	73	31	18	27	22	1.97
122435--122692	134	1.9	135	89	0	401	41	10	19	28	1.85
122434--122695	45	5.8	45	84	0	328	41	10	19	28	1.85
122435--122734	90	3.3	89	72	16	235	42	10	18	29	1.83
123238--123587	182	1.9	182	86	5	494	28	13	14	44	1.83
123959--123995	2	18.0	2	88	5	56	51	0	2	45	1.15
126198--126230	2	16.5	2	100	0	66	51	0	0	48	1.00
130731--130800	31	2.3	31	82	2	79	24	5	14	55	1.60
132118--132166	19	2.7	17	84	9	53	26	20	28	24	1.99
132139--132276	64	2.2	64	81	7	156	28	20	21	28	1.98
132670--132717	16	3.0	16	78	0	60	18	37	0	43	1.51
134949--135040	21	4.3	21	75	9	71	23	20	27	28	1.99
134949--135040	42	2.1	44	84	7	118	23	20	27	28	1.99
139985--140022	17	2.2	17	100	0	76	28	23	34	13	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140828--140876	19	2.7	17	84	9	53	26	20	28	24	1.99
140847--140952	45	2.3	45	85	4	142	30	19	20	29	1.97
144070--144121	9	5.8	9	75	6	52	28	1	0	69	0.99
144070--144120	18	2.8	18	79	8	68	29	1	0	68	1.00
144060--144112	18	2.9	18	83	5	63	32	1	0	66	1.03
144081--144138	23	2.5	23	80	5	64	36	1	0	62	1.06

Tables:   1

The End!