Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005574.1 Hibiscus syriacus cultivar Beakdansim tig00012935_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24832

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
868--1125
67
3.9
64
76
17
217
46
4
6
42
1.49
868--1114
33
7.3
33
72
17
170
45
4
6
42
1.51
1190--1218
14
2.1
14
100
0
58
13
6
0
79
0.93
2746--2799
20
2.9
19
84
10
60
18
3
0
77
0.91
2757--2800
11
4.1
11
83
13
56
18
2
0
79
0.83
2829--2892
8
8.1
8
75
19
55
21
4
0
73
1.01
2848--2899
22
2.4
22
90
6
79
19
5
0
75
1.01
2916--2966
2
25.5
2
100
0
102
49
0
0
50
1.00
3011--3067
22
2.6
21
76
13
62
22
3
3
70
1.18
3079--3121
10
4.1
10
77
11
50
16
2
0
81
0.79
3187--3278
5
18.0
5
78
12
80
19
5
2
72
1.14
3194--3236
19
2.3
19
83
0
50
18
9
0
72
1.11
13161--13633
181
2.6
181
86
3
646
42
13
16
26
1.86
13563--13605
20
2.3
19
88
11
63
51
11
16
20
1.75
14012--14084
23
3.2
23
92
0
119
34
5
21
38
1.77
24186--24268
37
2.2
38
93
4
150
24
18
9
48
1.77

Tables:   1

The End!