genome.fa.s5577.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005577.1 Hibiscus syriacus cultivar Beakdansim tig00012938_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57480

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7561--7634	21	3.5	21	92	0	112	29	28	21	20	1.98
7643--7737	21	4.6	21	81	5	122	18	21	27	32	1.97
7668--7762	40	2.3	42	94	3	167	20	18	25	35	1.95
7689--7754	19	3.2	20	72	16	64	19	19	22	37	1.94
7649--7771	61	2.0	60	81	6	140	21	19	24	34	1.97
7649--7771	21	6.1	19	76	9	84	21	19	24	34	1.97
8329--8367	6	6.5	6	100	0	78	0	15	51	33	1.44
8456--8673	42	5.3	42	93	2	379	36	24	17	21	1.94
8481--8700	21	10.6	20	71	14	144	35	25	18	20	1.95
8456--8700	42	5.9	41	90	3	352	35	24	18	21	1.95
8885--8966	31	2.6	31	84	0	110	47	8	4	39	1.56
13381--13427	24	2.0	24	91	0	76	40	0	19	40	1.51
14924--15083	82	2.0	82	93	0	275	20	25	18	35	1.95
18659--18696	18	2.2	18	90	4	60	13	55	0	31	1.38
27127--27188	13	4.8	13	83	0	70	30	20	16	32	1.95
40725--40759	17	2.0	17	94	5	61	17	48	22	11	1.79
40850--40908	26	2.4	26	86	8	79	44	0	10	45	1.37
40884--40965	29	2.8	29	90	1	119	31	3	12	52	1.56
45132--45165	17	1.9	18	94	5	61	23	0	29	47	1.52
45128--45174	18	2.7	17	86	3	67	17	0	27	55	1.42
52104--52260	65	2.4	65	84	2	208	31	25	17	25	1.97
53574--53612	19	2.1	19	85	9	53	41	2	0	56	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54186--54303	63	2.0	60	82	12	145	51	5	6	36	1.50
56037--56131	24	4.0	24	81	0	100	50	17	9	22	1.75
56090--56145	24	2.3	24	87	0	85	58	12	5	23	1.54
56480--56530	27	2.0	25	88	7	75	37	19	11	31	1.88

Tables:   1

The End!