genome.fa.s5578.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005578.1 Hibiscus syriacus cultivar Beakdansim tig00012941_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  164771

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2360--2416	29	1.9	30	92	7	98	43	7	21	28	1.78
8666--8719	28	2.0	26	85	7	72	51	1	1	44	1.22
14906--14936	14	2.2	14	94	0	53	54	6	16	22	1.64
15999--16065	23	2.9	23	84	0	80	23	28	22	25	1.99
18011--18113	31	3.3	31	79	6	109	29	15	20	34	1.93
18027--18145	31	3.8	31	78	8	100	27	15	21	34	1.94
18101--18159	30	2.0	30	86	0	82	22	18	22	37	1.94
18266--18330	10	6.1	10	76	13	58	26	15	10	47	1.78
18266--18326	22	2.8	22	87	0	95	26	14	11	47	1.78
18665--18749	32	2.7	32	77	5	82	45	17	4	31	1.69
25116--25147	15	2.1	15	94	0	55	6	15	68	9	1.36
26238--26562	163	2.0	163	94	0	571	28	20	21	29	1.98
40219--40315	30	3.4	29	94	5	171	28	15	7	48	1.71
41741--41797	29	2.0	29	86	6	80	15	17	19	47	1.83
41902--41926	2	12.5	2	100	0	50	48	0	0	52	1.00
42333--42361	2	14.5	2	100	0	58	48	0	0	51	1.00
42557--42634	31	2.5	31	87	2	113	53	8	11	25	1.66
48243--48281	20	2.0	20	94	0	69	30	25	7	35	1.84
52035--52106	22	3.5	21	70	24	64	38	1	2	56	1.22
60507--60557	26	2.0	27	88	7	79	39	7	25	27	1.83
65754--65792	18	2.2	18	86	4	53	51	7	0	41	1.31
70936--70960	11	2.3	11	100	0	50	36	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71253--71403	77	2.0	77	89	2	232	25	31	26	17	1.97
72216--72256	16	2.6	16	96	0	73	48	12	17	21	1.79
74786--75538	106	7.1	106	93	0	1256	33	25	18	22	1.97
75974--76006	15	2.1	16	88	5	50	24	21	15	39	1.91
75914--76037	36	3.4	36	89	2	194	24	21	14	39	1.91
75839--76100	138	1.9	139	81	2	321	28	20	12	38	1.89
75996--76170	65	2.6	65	84	4	224	32	22	9	36	1.86
77697--77721	11	2.3	11	100	0	50	36	0	0	64	0.94
78257--78304	24	2.0	24	87	0	69	56	4	6	33	1.44
83220--83274	21	2.6	21	88	0	83	21	18	32	27	1.96
83266--83365	21	4.7	22	72	16	95	21	22	20	37	1.95
83249--83365	42	2.8	42	96	0	207	21	20	22	35	1.96
84079--84152	21	3.6	21	76	7	80	33	25	20	20	1.97
84209--84263	21	2.6	21	94	0	92	30	27	21	20	1.98
84119--84414	111	2.7	111	91	0	502	31	19	23	25	1.98
84108--84284	90	2.0	90	83	6	225	33	18	22	25	1.97
84320--84374	21	2.6	21	94	0	92	32	25	21	20	1.97
85346--85395	24	2.1	24	85	7	66	34	0	6	60	1.21
104186--104314	63	2.1	60	80	9	136	41	6	6	44	1.56
104703--104804	48	2.1	49	94	1	179	46	16	18	18	1.85
113105--113166	24	2.6	24	86	0	88	12	11	22	53	1.71
114646--114720	10	7.7	10	68	21	52	9	10	21	58	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114652--114716	16	4.1	16	91	0	112	7	10	23	58	1.57
114787--114818	16	2.0	16	100	0	64	6	12	25	56	1.59
115626--115650	2	12.5	2	100	0	50	48	0	0	52	1.00
118270--118295	10	2.6	10	100	0	52	26	19	7	46	1.77
119756--119858	36	2.9	36	94	0	179	42	16	17	23	1.88
127862--127964	36	2.9	36	98	0	197	41	17	17	23	1.90
134356--134414	31	1.9	31	92	0	100	30	1	25	42	1.65
134959--135213	15	17.0	15	95	0	438	50	0	1	47	1.08
135221--135288	14	4.5	14	75	15	55	36	0	4	58	1.18
134959--135256	15	19.5	15	89	5	364	48	0	1	49	1.11
135251--135306	18	3.3	18	73	19	66	30	0	12	57	1.36
135236--135617	32	12.4	32	73	20	271	34	0	11	53	1.38
135291--135333	22	2.0	22	100	0	86	34	0	13	51	1.42
135259--135728	54	8.6	56	78	14	291	34	0	12	52	1.39
135236--135700	86	5.6	82	75	17	388	34	0	12	53	1.38
135216--135585	134	2.7	137	88	8	553	35	0	11	52	1.38
135429--135521	22	3.8	22	72	24	87	37	0	10	51	1.37
135676--135718	22	2.0	22	95	0	77	32	0	16	51	1.45
135743--135801	31	1.9	31	92	0	100	42	10	6	40	1.65
139929--139973	6	7.5	6	100	0	90	33	51	15	0	1.44
140462--140518	6	10.0	6	98	1	93	0	17	52	29	1.45
140637--140750	20	5.6	20	74	12	115	39	22	23	14	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140609--140771	41	4.0	41	91	4	222	38	22	22	17	1.93
140609--140771	82	2.0	83	89	3	249	38	22	22	17	1.93
140698--140833	62	2.2	62	89	2	202	35	26	19	18	1.95
140634--140841	21	10.1	21	72	8	122	37	24	20	17	1.93
160897--160947	21	2.5	20	76	17	52	58	1	0	39	1.09

Tables:   1

The End!