genome.fa.s5581.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005581.1 Hibiscus syriacus cultivar Beakdansim tig00012952_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117071

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2232--2267	9	4.1	9	89	3	56	50	0	0	50	1.00
2234--2264	11	2.8	11	90	0	53	51	0	0	48	1.00
2234--2267	2	18.0	2	88	11	54	50	0	0	50	1.00
2636--2669	15	2.3	15	90	10	52	61	8	5	23	1.47
23142--23173	15	2.1	15	94	0	55	28	18	0	53	1.45
25134--25173	21	1.9	21	85	10	55	32	27	15	25	1.95
28117--28167	21	2.5	20	78	9	57	41	9	1	47	1.48
28322--28412	3	30.3	3	95	0	164	2	31	0	65	1.04
29125--29185	30	2.0	30	87	0	86	39	16	19	24	1.92
29936--30484	203	2.7	204	87	2	762	28	14	26	29	1.95
30742--31113	177	2.1	173	84	4	471	35	19	17	26	1.94
31602--31672	30	2.4	30	90	0	106	26	29	21	22	1.99
31615--31679	30	2.2	30	85	0	85	29	29	18	23	1.98
31663--32027	177	2.1	177	83	1	462	34	23	16	25	1.95
32547--32756	42	5.0	42	89	0	312	14	32	15	37	1.88
34747--34846	33	3.0	33	95	0	173	47	20	14	19	1.83
35589--35629	20	2.0	21	85	4	57	56	4	14	24	1.58
35983--36023	20	2.0	21	85	4	57	56	4	14	24	1.58
35000--36832	392	4.6	398	86	4	2136	31	19	16	31	1.94
35000--36830	804	2.3	791	83	6	2176	31	19	16	31	1.94
36611--37091	259	1.9	257	82	6	614	30	19	18	30	1.96
38189--38224	16	2.3	16	90	4	56	52	0	2	44	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39840--39972	56	2.4	56	100	0	266	19	38	6	35	1.78
40066--40129	2	32.0	2	100	0	128	50	0	0	50	1.00
43412--43463	22	2.3	23	87	9	81	32	17	26	23	1.96
47813--47843	6	5.2	6	100	0	62	48	0	0	51	1.00
48385--48447	33	1.9	33	86	0	90	20	23	33	22	1.97
53338--53430	20	4.7	20	98	0	177	38	21	20	19	1.93
53417--53463	20	2.3	20	92	0	76	31	27	19	21	1.97
53297--53443	60	2.4	61	79	9	183	33	23	19	23	1.97
53297--53464	60	2.8	60	68	19	141	32	23	19	24	1.97
54291--54358	24	2.8	24	86	0	91	26	17	17	38	1.92
56743--56875	33	3.8	34	77	17	128	39	23	21	15	1.91
56762--56830	20	3.4	21	86	7	99	34	26	20	18	1.96
56826--56897	33	2.1	34	92	2	119	48	19	20	11	1.79
56912--57007	33	2.8	34	87	6	124	14	21	20	42	1.88
57113--57149	14	2.6	14	86	0	56	48	21	0	29	1.50
58875--59203	103	3.2	103	95	0	561	37	25	11	25	1.90
66230--66269	21	1.9	22	90	10	66	15	10	37	37	1.80
66298--66340	21	2.0	22	95	4	79	27	30	18	23	1.98
66380--66419	21	1.9	21	100	0	80	15	32	37	15	1.88
66445--66523	20	4.2	20	76	17	78	15	27	36	20	1.92
66468--66497	15	2.0	15	100	0	60	13	26	33	26	1.93
66447--66517	36	2.0	36	86	2	99	16	28	33	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67919--67966	19	2.5	20	82	3	62	29	12	6	52	1.63
68825--68894	34	2.1	32	89	5	104	21	31	15	31	1.95
69109--69148	21	1.9	21	90	10	64	15	12	37	35	1.85
69301--69379	21	4.0	21	76	18	89	13	27	37	20	1.91
69323--69352	15	2.0	15	100	0	60	13	26	33	26	1.93
69302--69373	36	2.0	36	91	0	117	15	27	36	20	1.93
69841--70161	103	3.1	103	95	0	579	37	24	12	25	1.91
71859--71957	42	2.4	42	77	3	110	23	19	35	22	1.96
72452--72529	20	3.9	20	94	0	129	38	21	19	20	1.94
72538--72656	53	2.2	53	82	5	143	15	19	21	44	1.86
72576--72712	20	7.5	20	72	21	104	16	18	21	43	1.88
72544--72709	87	1.9	87	93	0	287	15	19	20	43	1.87
72599--72689	33	2.7	34	79	3	112	14	19	21	43	1.87
74599--74687	20	4.5	20	85	1	99	46	22	16	14	1.84
75026--75091	22	3.0	22	90	0	105	21	15	39	24	1.91
75295--75340	20	2.3	20	100	0	92	19	19	21	39	1.93
81343--81395	16	3.4	15	71	19	54	62	0	7	30	1.23
81343--81415	32	2.3	32	100	0	146	60	0	8	31	1.26
81361--81413	16	3.3	16	70	19	56	60	0	9	30	1.28
81358--81417	17	3.6	17	72	17	63	61	0	8	30	1.25
81996--82081	24	3.5	24	74	7	66	25	13	12	47	1.79
87140--87196	18	3.1	18	72	20	55	66	1	8	22	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87276--87338	22	3.0	20	76	15	56	66	0	3	30	1.07
87278--87336	17	3.6	17	76	17	54	66	0	3	30	1.08
88874--90137	106	12.0	106	91	2	1960	22	18	25	33	1.97
89760--90062	94	3.1	94	86	7	408	23	17	24	34	1.96
91037--91091	22	2.5	22	96	0	101	25	12	25	36	1.91
91709--91758	19	2.7	19	84	6	59	0	8	8	84	0.79
91708--91763	29	1.9	29	86	13	80	0	8	8	82	0.86
91698--91757	15	3.9	15	77	16	61	1	8	8	81	0.93
91695--91767	30	2.8	25	75	18	67	1	8	9	80	0.95
91721--91775	25	2.2	26	84	12	71	0	12	9	78	0.97
102687--102768	31	2.7	30	76	10	85	37	8	8	45	1.65
102687--102793	29	3.6	29	79	13	101	38	9	11	41	1.73
107499--107562	30	2.2	30	83	8	78	48	4	0	46	1.23
107978--108078	29	3.5	29	84	2	123	20	36	27	14	1.92
114616--114679	30	2.1	30	97	0	119	62	17	4	15	1.49

Tables:   1

The End!