genome.fa.s5582.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005582.1 Hibiscus syriacus cultivar Beakdansim tig00012954_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  187717

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3591--3636	20	2.3	20	88	3	67	28	17	36	17	1.92
17041--17065	10	2.5	10	100	0	50	36	0	8	56	1.29
22675--22703	2	14.5	2	100	0	58	51	0	0	48	1.00
29160--29189	15	2.0	15	100	0	60	33	13	20	33	1.91
30341--30389	25	2.0	25	100	0	98	16	24	26	32	1.96
33835--33884	26	1.9	26	87	0	73	62	0	2	36	1.07
41576--41821	39	6.5	36	79	11	228	43	4	6	45	1.51
41616--41854	117	2.1	109	80	11	263	43	4	5	46	1.47
41806--41887	33	2.5	32	90	4	119	43	1	6	48	1.35
41952--41983	16	1.9	17	93	6	57	25	3	3	68	1.18
41963--42021	10	5.5	10	76	13	55	25	6	1	66	1.26
41951--42006	13	4.2	13	81	6	69	28	3	1	66	1.19
44801--44851	23	2.3	22	79	3	57	31	0	13	54	1.39
58077--58120	21	2.1	21	86	0	61	29	27	27	15	1.96
58148--58192	22	2.0	22	82	4	54	31	31	26	11	1.91
58885--59008	31	4.0	31	81	7	126	31	19	19	29	1.96
58996--59067	30	2.4	30	90	0	108	23	19	25	31	1.98
63320--63363	21	2.1	21	86	0	61	29	27	27	15	1.96
63389--63433	22	2.0	22	86	4	63	31	33	26	8	1.87
64128--64251	31	4.0	31	81	7	135	29	18	20	31	1.96
64128--64251	63	2.0	61	85	7	169	29	18	20	31	1.96
67000--67032	15	2.2	15	94	0	57	36	33	18	12	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67144--67196	23	2.2	26	90	10	85	30	24	5	39	1.78
67572--67709	64	2.2	64	86	5	190	28	18	18	34	1.95
70384--70468	33	2.4	37	77	20	108	15	10	36	37	1.82
70393--70477	33	2.5	33	90	5	127	12	10	36	40	1.78
70459--71004	269	2.0	262	89	5	837	27	12	21	39	1.89
70959--71037	38	2.1	39	92	4	135	11	10	39	39	1.75
73264--73309	23	2.0	23	86	0	65	41	21	23	13	1.88
74240--74464	64	3.5	64	82	7	255	32	18	19	28	1.96
75094--75157	30	2.1	30	85	0	83	18	18	28	34	1.95
78662--78879	64	3.4	63	79	10	234	33	18	19	28	1.96
79516--79579	30	2.1	30	85	0	83	18	18	28	34	1.95
81489--81532	21	2.1	21	100	0	88	47	25	4	22	1.70
83297--83368	23	3.5	21	72	23	64	45	1	1	51	1.18
83293--83383	30	3.0	31	79	10	82	48	1	1	49	1.15
83297--83395	31	3.2	31	81	8	105	44	1	1	53	1.14
83363--83406	23	1.9	23	86	9	63	45	2	0	52	1.13
83448--83490	21	2.0	21	82	8	52	60	0	0	39	0.97
83477--83550	26	2.8	27	79	8	71	48	1	0	50	1.09
83604--83650	19	2.4	20	79	13	53	48	2	0	48	1.13
83467--83688	123	1.8	122	79	12	258	49	4	0	45	1.27
89465--89535	29	2.4	31	85	4	101	35	7	2	54	1.42
89635--89696	31	2.0	31	90	0	97	35	8	0	56	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89690--89765	30	2.5	30	86	0	98	40	11	0	47	1.40
89826--89914	28	3.1	27	78	15	92	35	2	0	61	1.08
89917--90079	29	5.6	29	80	12	172	53	0	8	37	1.31
89917--90079	30	5.5	30	79	10	158	53	0	8	37	1.31
89958--90079	59	2.1	59	86	6	167	53	0	8	38	1.31
95687--95720	16	2.1	17	94	5	61	44	17	0	38	1.49
111586--111708	45	2.7	45	84	0	138	38	7	20	34	1.80
111783--111848	23	2.9	23	75	8	71	16	22	25	34	1.95
122974--123005	2	17.0	2	87	12	50	50	0	0	50	1.00
123534--123568	16	2.1	17	89	5	54	22	0	2	74	0.95
123542--123583	19	2.2	20	86	4	59	23	0	4	71	1.05
124545--124581	2	19.0	2	88	5	58	45	0	0	54	1.00
129217--129267	20	2.5	20	90	6	77	19	27	19	33	1.96
131541--131612	36	2.0	36	83	8	92	48	1	4	45	1.30
135381--135479	21	4.8	20	75	6	81	38	22	18	21	1.93
135446--135715	20	13.5	20	80	6	260	37	25	17	20	1.94
135485--135715	40	5.8	40	91	4	288	35	25	17	22	1.95
136396--136442	24	2.0	24	87	8	69	25	14	21	38	1.92
136617--136641	12	2.1	12	100	0	50	72	0	28	0	0.86
138937--139214	19	15.7	19	81	15	346	45	17	21	15	1.85
138937--139214	109	2.6	107	91	5	440	45	17	21	15	1.85
138923--139208	71	4.1	69	90	7	397	46	17	21	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139204--139318	53	2.2	50	93	4	194	13	25	18	42	1.87
139223--139318	18	5.4	18	85	12	128	14	22	17	44	1.85
139424--139460	14	2.6	14	91	0	65	45	21	0	32	1.52
141438--141494	14	3.7	14	77	20	60	45	22	21	10	1.82
141419--141511	33	2.8	33	95	0	168	47	21	20	10	1.80
141382--141516	19	7.6	19	76	16	128	45	23	19	11	1.82
141512--141640	19	7.3	19	70	17	98	9	17	27	45	1.78
141512--141606	33	2.9	33	87	6	138	8	17	27	46	1.77
141688--141966	91	3.1	93	95	4	514	45	19	12	22	1.84
143671--143760	14	5.7	14	67	23	54	44	23	23	8	1.81
143663--143777	33	3.5	33	92	0	194	47	20	21	9	1.78
143794--143850	14	3.7	14	75	20	60	8	24	22	43	1.81
143778--143858	33	2.5	33	95	0	144	8	22	22	46	1.78
143835--143910	21	3.7	21	83	3	109	11	25	17	46	1.82
143834--143911	41	1.9	41	97	0	147	12	25	16	44	1.83
143990--144060	33	2.2	33	92	0	115	47	18	22	11	1.80
144421--144534	40	2.8	41	86	2	158	15	16	26	41	1.89
144419--144534	20	5.8	20	74	6	108	15	17	25	41	1.89
144520--144602	21	4.0	21	73	6	78	25	16	24	33	1.96
144500--144598	42	2.4	43	77	11	100	21	18	23	37	1.94
147667--147698	15	2.1	15	94	0	55	34	0	0	65	0.93
149250--149274	12	2.1	12	100	0	50	20	16	24	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157415--157452	17	2.2	18	85	4	51	28	0	2	68	1.03
157404--157453	19	2.6	19	80	17	59	28	0	2	70	0.99
158726--158765	21	2.0	20	85	14	55	25	0	0	75	0.81
162672--162704	2	16.5	2	100	0	66	51	0	0	48	1.00
163097--163179	39	2.1	39	86	0	112	36	24	21	18	1.95
165555--165643	31	2.9	31	91	0	133	23	16	21	38	1.93
165996--166061	20	3.3	20	95	0	114	33	21	10	34	1.88
166011--166080	20	3.5	20	88	5	81	32	18	11	37	1.87
168049--168084	2	18.0	2	100	0	72	50	0	0	50	1.00
169834--170292	55	8.4	55	87	0	634	26	18	19	35	1.95
170623--170663	19	2.2	19	86	0	55	29	19	14	36	1.92
187185--187225	20	2.0	20	100	0	82	9	29	4	56	1.53

Tables:   1

The End!