Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005583.1 Hibiscus syriacus cultivar Beakdansim tig00012961_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87619

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2752--2789
18
2.1
18
90
0
58
31
36
10
21
1.87
6305--6385
23
3.7
23
77
8
96
25
25
24
23
2.00
6305--6403
43
2.3
43
80
3
110
25
25
26
23
2.00
8299--8328
14
2.1
15
93
6
53
6
3
26
63
1.35
8374--8417
2
22.0
2
100
0
88
50
0
0
50
1.00
9195--9545
43
8.2
43
77
8
256
33
21
21
22
1.97
9192--9543
128
2.7
127
80
7
372
34
21
21
22
1.97
9221--9545
85
3.8
83
83
6
375
33
21
22
22
1.98
12955--13316
41
8.8
42
81
3
378
33
17
21
27
1.96
12955--13316
83
4.4
83
86
1
478
33
17
21
27
1.96
12955--13316
124
2.9
124
81
5
410
33
17
21
27
1.96
13450--13609
65
2.5
64
84
5
189
30
21
18
28
1.97
13581--13629
19
2.6
19
84
9
57
24
28
20
26
1.99
13842--13871
11
2.7
11
100
0
60
56
10
23
10
1.62
16059--16111
23
2.4
22
81
12
63
50
1
7
39
1.41
16250--16344
23
4.2
23
78
8
79
52
3
1
43
1.24
16319--16383
23
3.0
21
73
22
53
43
3
3
50
1.33
21579--21652
20
3.6
21
78
18
75
28
20
24
27
1.99
25829--25885
20
2.6
21
78
13
62
28
22
24
24
2.00
31795--31832
3
12.7
3
100
0
76
68
0
0
31
0.90
32429--32489
2
30.5
2
100
0
122
50
0
0
49
1.00
34042--34074
16
2.1
16
100
0
66
12
36
12
39
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34911--34936
13
2.0
13
100
0
52
76
0
0
23
0.78
39028--39056
12
2.3
13
94
5
51
51
13
3
31
1.58
40331--40402
32
2.2
32
80
4
92
29
36
20
13
1.92
40721--40781
28
2.2
28
93
0
104
34
6
11
47
1.66
44048--44075
2
14.0
2
100
0
56
50
0
0
50
1.00
57037--57107
36
1.9
37
91
2
117
53
1
1
43
1.18
60447--60504
2
29.0
2
92
0
98
50
3
0
46
1.18
61882--61914
14
2.4
14
90
10
50
21
3
36
39
1.69
63364--63415
23
2.3
21
81
12
59
42
0
1
55
1.10
63773--63877
50
2.1
50
87
0
147
17
34
27
20
1.95
63989--64029
10
4.1
10
84
12
57
31
26
0
41
1.56
64156--64488
111
3.0
111
96
0
594
36
7
11
44
1.69
67459--67496
12
3.3
12
78
14
53
31
5
52
10
1.58
67637--67768
51
2.6
51
79
2
131
21
28
31
18
1.97
68007--68037
15
2.0
16
93
6
55
45
6
25
22
1.76
73127--73167
12
3.5
12
83
6
57
31
0
7
60
1.24
75170--75404
113
2.1
113
90
0
362
41
10
11
36
1.75
75613--75694
41
2.0
41
87
0
119
31
32
9
25
1.88
83007--83065
31
1.9
31
85
0
82
33
16
22
27
1.95
87420--87472
26
2.1
25
82
10
63
50
1
5
41
1.36

Tables:   1

The End!